RNA id: TCONS_00023033


Basic Information

Item Value
RNA id TCONS_00023033
length 909
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_011568
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33296436 ~ 33309689 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATACGTGAAGTCGGTGGATATTTCATCTTTTTTGGACGAGGTTTGGGAATAAGTGCAATATGGACACCAATGTCCAGAAAAGGCGAGAGAACAAGAAGTCGTTACGGGTTAAGGTCATTAGTCTGGGAAATGCTGAGGTGGGAAAGAGCTGCATCATTAAACGTTACTGTGAGAAGAGATTTGTGCCCAAGTATCTAGCCACTATTGGGATAGATTATGGTGTAACAAAGGTTCAGGTACGGGACCGGGagataaaagtaaatatttttgacATGGCTGGACATCCTTTCTTTTATGAGGTCCGCAATGAGTTTTATAAGgactctcagggagtgattctaGTCTATGATGTTGGCTTGAGAGAGAGTTTTGATGCTCTGGACAGCTGGCTCACAGAGATGAAGCAGGAGATGGGCTCGCAGGCTAACATGGAGAACATCATCTTTGTTGTGTGTGCAAACAAGGTTGACTTGACAAAAAGGAGAGTGGTGGATGAGAGTGAAGGGAGACTTTGGGCTGAGAGCAGAGGATTTCATTACTTTGAAACTTCTGCCCAGAGCGGGGAAGGCATCAATGAAATGTTTCAGTCGTTTTTCTCCTCAATAACTGATATGTGTGAAAACGGAGGGAAGAGACCTACTCCAGAGGTGAGCGTAGGTTTTACCAAAGAGCAGGCAGACACCATCCGACGCATCCGCAACAGCAAAGACAGCTGGGATATGCTGGGAGTCAAACCTGGGGCCACAAGGGAAGAAGTCAACAAGGCATACAGGAAGTTGGCGGTACTGTTGCACCCAGACAAGTGTGTGGCCCCAGGCAGCGAGGATGCCTTTAAAGCAGTGGTTAATGCTCGCACGTCCCTCCTCAAGAATATCAAGTAGGATCAAGTGTCCACACACAACTGCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-081022-93 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be located in nucleus. Orthologous to human DNAJC27 (DnaJ heat shock protein family (Hsp40) member C27).

Ensembl:

ensembl_id ENSDART00000154580

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023030 lncRNA upstream 102831 33184337 ~ 33194021 (+) True XLOC_011566
TCONS_00024476 lncRNA upstream 175056 33120580 ~ 33121796 (+) True XLOC_011565
TCONS_00024475 lncRNA upstream 176342 33118538 ~ 33120510 (+) True XLOC_011564
TCONS_00024719 lncRNA upstream 185686 33109706 ~ 33111166 (+) True XLOC_011563
TCONS_00024474 lncRNA upstream 186934 33102503 ~ 33109918 (+) False XLOC_011563
TCONS_00023045 lncRNA downstream 129517 33433566 ~ 33436811 (+) False XLOC_011574
TCONS_00024477 lncRNA downstream 874143 34178192 ~ 34182830 (+) True XLOC_011579
TCONS_00024478 lncRNA downstream 965071 34269120 ~ 34287056 (+) True XLOC_011582
TCONS_00024720 lncRNA downstream 1330049 34634098 ~ 34675436 (+) True XLOC_011583
TCONS_00023069 lncRNA downstream 1939716 35243765 ~ 35244470 (+) True XLOC_011586
TCONS_00023031 mRNA upstream 66813 33226955 ~ 33230039 (+) True XLOC_011567
TCONS_00023029 mRNA upstream 95012 33158350 ~ 33201840 (+) False XLOC_011566
TCONS_00023018 mRNA upstream 666569 32622933 ~ 32630283 (+) False XLOC_011558
TCONS_00023022 mRNA upstream 667178 32623931 ~ 32629674 (+) False XLOC_011558
TCONS_00023015 mRNA upstream 688331 32571584 ~ 32608521 (+) True XLOC_011557
TCONS_00023035 mRNA downstream 7735 33311784 ~ 33339480 (+) False XLOC_011570
TCONS_00023036 mRNA downstream 9517 33313566 ~ 33339626 (+) True XLOC_011570
TCONS_00023037 mRNA downstream 36626 33340675 ~ 33374538 (+) False XLOC_011571
TCONS_00023038 mRNA downstream 36661 33340710 ~ 33374440 (+) True XLOC_011571
TCONS_00023039 mRNA downstream 71420 33375469 ~ 33386590 (+) True XLOC_011572
TCONS_00023028 other upstream 123699 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023027 other upstream 595031 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023026 other upstream 644347 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023025 other upstream 665338 32627924 ~ 32631514 (+) True XLOC_011558
TCONS_00023024 other upstream 666662 32624890 ~ 32630190 (+) False XLOC_011558
TCONS_00023050 other downstream 281297 33585346 ~ 33585462 (+) True XLOC_011577
TCONS_00023073 other downstream 2610961 35915010 ~ 35915126 (+) True XLOC_011591
TCONS_00023075 other downstream 3310266 36614315 ~ 36614432 (+) True XLOC_011593
TCONS_00023082 other downstream 3949699 37253748 ~ 37281313 (+) True XLOC_011598
TCONS_00023083 other downstream 3967970 37272019 ~ 37272133 (+) True XLOC_011599

Expression Profile

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