RNA id: TCONS_00023036


Basic Information

Item Value
RNA id TCONS_00023036
length 4847
RNA type mRNA
GC content 0.44
exon number 18
gene id XLOC_011570
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33311784 ~ 33339626 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGTGCAGTTGATAGAAGTCTCAAGCTGAGTTCTGGGATCTAAAGCCTGTTTAGATCATGGCTTTGaattcttcagaaatcactgtTCCACCTCAAGTTTGCACAATTGTGCCTCCATCACCCAACTTGAAACGCAAGCAACTAATGTGGCAGAATGCTGTACGTCACATTATTGACCAACGAGGAATGCACCACGAGGGGCGAGCGGTCAACTCTCGCAAAATCATTGTTACTGACGCCTACATCGATGACATCAACAGACAGATTCGGAACAAAGCTGCACGGGGCAATGCTGGCATGCATAAGCGGCGCTCCTCTGCAGCTCGCATCCATCCATTTCGAGAACGCAACTCCACCTGCACACGGAAGTCAACAGAATCAGTTACTGATGCAGACTTCTTTGTAAGCTGGGGCTCCACAGTGCGTGGCATCTTCCTCCCTGCTCTCCACCACAAGTTCAAATCTCACGATCTGGAGCATTTGTACCAGCAGCACTCATCTGGCCAACGGCGAACTTCCCTCGTAGTCACTAATGTAATTGATATTCTTACCAAACTCCACATTATCTTCATCTACCTGGCTTTGGCCCCTGAGATGGTGGACTCTCAACATGGATGGTTGGCCGGGCTCTTAATGGCGCTCGGAGCGATCATATGTGTCTTAGTTCTGACTTGTAAAGGACTGATGTCTCCAGATTACCTTCGCTATGCCGGGCTGGCAAGCTGGCTGTCACAGACTGTTCAAGCGCTGGGGGGACTGGTGTACGGATTGGAGACAGACCAGTCGTGGTATGTGCTCTTCACCCTTTTTGCCATCTACACACTATTGCCCCTACCTCTGCTGTGGTCCATCTGCATGGGATTCCTCACTGCTGCCTTGCACCTGTTTGTGGATACCTTTAAGAACTACAATGACACAGCCATTGTAAGAAAGTTACTAGCGAAAGGTCTATTGTACATGGGCATGAATACTGCAGGGCTTTTCATCCACTATTTATCCGATCGTGCCCAAAGGCAGGCCTTCCTTGAGACACGGCGCTGCATTGAGGGTCGAGTCAAGATGGAGAGAGAGAACCAGAGACAGGAGCGCTTGGTGATGTCTATTCTTCCTCGGTTTATTGCTATGGAGATGATTGGTGATATGACTGCCCTGGATGATGAATTGCTTCCTCAACAGTTCCATAAAACTTACTTTCATCAATACAAAGATGTCAGCATCCTGTTTGCTGACATAAAAGGCTTCACCTCTCTCTCCATGACCATGCCGGCTCAAGAATTGGTGCGGACTCTCAATGAGCTGTTTGGTCGCTTTGATCGCCTTGCAGAGGAGAATCACTGCATGAGGATAAAGATTCTTGGAGATTGTTACTACTGTGTGTCTGGGGTTCCAGAGCCCCAGACTGCACATGCCCGCTGCTGTGTAGAAATGGGTCTGGCCATGATCAACACTATACGTTATGTGCGCAAAGAGCTGAAGAGAGATATGGACATGCGTATTGGAATCCACTCTGGCTCTGTCCTGTGTGGGGTTTTGGGTCTTCAGAAATGGCAGTTTGACGTGTGGTCTTGGGACGTAGATGTTGCCAACATGCTAGAGGCTGGAGGAATCCCAGGGAGGATTCATATATCGCGAGCAACCCTGGACTGTCTCGAGGGTGTTTATGAGACGGAAGAGGGCCGAGGACATGAGCGCAATGAGTTTTTACGCAAGCACAAGATCGACACTTTTCTGATCCGCCACACACCCCAAGATGACAAAGAGCCCCCTAAAGTCAGGAGAACTAGCAAAGATGAGACAACATGGAGTGCAGAGCTGCCTTTTGACAACATCATCGGAATGAACTGTATATTAGCCACGTTTACCAATGGCTCCTTGGTGCACCTGCCCAATCAGATTACTCCGCATTGTGCCGGGTCTCGAGAAATCAACAAGAGAATCAAGCAAGCCATCGAGGTGCGCAGCAGTGAACGAATGCGCAAAGAACACATCACACCCTTCACTCTAGTCTTCAAAGACACACACATTGAGGGAAAGTTTTCTCAAATGAGAGATGAGATGTTCAAGTCCAATTTGGCCTGTTCCTTCCTTCTGCTCCTCTTCATCATGGCTGCCCAAGCCCTCATCCCTTCTCCACAATTCTTTCCCATGATAATCCAGTTTTTAGTGTTCCTGTTTGTCTACATGCTGGTGCTTCTGGTCACTCTGGCTGAGGAATTTAAGCGCTCCCCGCCATATTTACAGCATCTGTGCTGCTGGATCCACGAGACCAAGAGCATCCGGAACCTACTCACCCTCACTGCTATTGCTATTAACTTTGGTGTAGCCTCCTGCAACATTTTTTGGTGTAACGGCACATTTGAAGAGACTGAGAAAAGCAACAAGAACTCAGAACATGGTAAACAGTGGCCAGTAAACATCTGCACACATCCTGAGttcTTCGTTTTGAGTGGTGTGGTGGCAATGGTGACGTGTGCTGTCTTCCTGAGGCTCAGCTGTCTGTTGAAGCTAGCAGTGCTGACGTTAGTCATTGCAGTTTACACATACCTCATTGAGGTTGCCTTCCATGTGCTCTTTATCCGCCAACACCAAAACAGCCAAATTCAGAGATCTCAATACCTCAGACGGAAAGGCATTTCTGTGCTGCTAATGGCCATGTTTGTTGTGGTCGTCCTTTACAACAGTAGACAGCTAGAAACTACATCCAGGCTTGACTTCCTGTGGCGTCTGCAGGCCAGGCAAGAAGTGGAGGACATGAAGGAACTAAGGGAGCATAACGAGTGTCTGCTGTACAACATCCTCCCTGCCCACGTCGCTCGCCACTTTCTCGAGAGAGACAGAAACAATGAGGATCTGTTCTCTGAATCGTACGAGCGAGTTGGAGTGATGTTTGCTTCCATTCCAGGCTTTTCCGATTATTACGAGAAGAAAGAATTGATTCATCAAGACGTGGAGTGTCTGCGTCTTCTTAATGAGATCATTGCTGACTTTGATGAGCTACTGGATGAGCCTTACTTTCAGGACATTGAGAAAATCAAAACCATTGGCAGCTGCTACATGGCTGCATCGGGCCTTTCTCCTGAGAAACAGGAATGTGAAGATGAGTGGGCTCACCTCAGTACACTGGTTCTGTTCGCTTTGGCCATGCAAGAAACTctgaaagaaataaacaaacgCACCTCTAATGACTTCTGGTTGCGTGTTGGTATTTCTCACGGGCCTGTAGTCGCTGGTGTGATTGGTGCCACAAAGCCTCAGTATGATATTTGGGGCATGACTGTAAATCTTGCTAGCCGAATGGACAGCACAGGGCTCAGTGGGCGTATTCAGGTCCCAGAAGCCACCAGCCGTGTCCTGGCCGAACACGGCTTTATGCTGCAGCTTAGAGGGGAAATCTATGTCAAAGGAGTTAGCGAGCGGCGGGGAGCGGTCCGCACATATTTCGTAAGCAGCAGGGAACACAATTCAAGCTACGCTGAGAGAAACACTAGCAGAGGGATCTCTCTCGGGAGAAACACTCTCGCCGCTGTGGTCTTTTCCCTGGTGCAGGCCCGCAAGAAAGAAGAATTACGAGAAGCCAATGGAGGATTTCATCTGAAGGACATGGCATGAATTCGGATTGAAAAGTGGACAGAAGCCATATTTAATACCTCTTCAGTTTTTTTAGACTGGTGTCTGAGTCAATGCCTTCAAGTGATTTTCTGCATTCTCTGTCGTTCTTTCTGAACGGTACCAACTTCACATCTCATATATAACCAGATTTCTACAGGATTTCTTATTGTAACGGAAAGAACAAATTGCTTCTAAAAGTCATGTTTCTTATGTTCTGGAAGTTTTTGAATCATGAAGTTGTGAGTTTATTATAGCAGAGCTGCAAATAAACACTTTATATTTTGGACAAGACCGTAACTGCAAAAACAAAGGAACTCTGGATTAGATCAAACATGATGACTCATAGTTGGGATTTCTGTATCTTTATCTGGATATTTTTCCCCATAGTTTTCTGTAATCAACTGCCAATGAATTGTGAGAAATGAAGGGTCTGACATCACCATTGCAAAAAGCTAATTGGCCTATTATCTGATGCATGTGTATTAGTCAATGACACTCTGGAAAAGCTATAAATCTCAGGATTATTCATCCAGCTTAGACGACTTTCTATGAAaagtaatatttagattttttgtgcgTAATTGACCATTTATAAACTCTTTTTATATGATGTTTACATGATCACATGAGGTAGTGTGACAGGAAAAGCTTCTGtctctgtttattgtttttaatgttgttgacTCAATATTGAGGCAGAATTACAATAACGTCACGGTGAATGCATAAAGCAGGAATTAACAATGCCAAAGTTCTGTTTTAGACAATAAAGGTATATTTTTAGTGCACGGTCCACCAAATTTTACtgagtgcattttttttttttttggtattttatttttaaatatatttgggtTCAGTGTTTGTCTGATTAAGCAGTTTTTGGAAGCAGATACAAACAGGCTAACAATAAACCTTTTTGCTATGCCGCATGATGCTTTTGGAGTAACTTcatttaaactgtaaataatcTGTGAAAAAGATACAACAACTTGGTATACAATGAAGTGCATTTATTCTTCTTACAGTTTATCTGtcaaatatcaaaaacaaaaaacaaaaaactgattAGAATTAACAAAGTAGTTTCACCGGATCATGACAACAGCCTGAAAACCTGAAACAACTTATTTTCTCACAGCAGTATTACTGACATATTGAATATTACTGTACTGAAGAgaatgctaaataataataataattataataatagtaataaaaatcataataatctAG

Function

GO:

id name namespace
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006171 cAMP biosynthetic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004016 adenylate cyclase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-619 Predicted to enable adenylate cyclase activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and cAMP biosynthetic process. Predicted to act upstream of or within cyclic nucleotide biosynthetic process and intracellular signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human ADCY8 (adenylate cyclase 8).

Ensembl:

ensembl_id ENSDART00000045040

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023030 lncRNA upstream 119545 33184337 ~ 33194021 (+) True XLOC_011566
TCONS_00024476 lncRNA upstream 191770 33120580 ~ 33121796 (+) True XLOC_011565
TCONS_00024475 lncRNA upstream 193056 33118538 ~ 33120510 (+) True XLOC_011564
TCONS_00024719 lncRNA upstream 202400 33109706 ~ 33111166 (+) True XLOC_011563
TCONS_00024474 lncRNA upstream 203648 33102503 ~ 33109918 (+) False XLOC_011563
TCONS_00023045 lncRNA downstream 93940 33433566 ~ 33436811 (+) False XLOC_011574
TCONS_00024477 lncRNA downstream 838566 34178192 ~ 34182830 (+) True XLOC_011579
TCONS_00024478 lncRNA downstream 929494 34269120 ~ 34287056 (+) True XLOC_011582
TCONS_00024720 lncRNA downstream 1294472 34634098 ~ 34675436 (+) True XLOC_011583
TCONS_00023069 lncRNA downstream 1904139 35243765 ~ 35244470 (+) True XLOC_011586
TCONS_00023032 mRNA upstream 3877 33296436 ~ 33309689 (+) False XLOC_011568
TCONS_00023033 mRNA upstream 9517 33296852 ~ 33304049 (+) True XLOC_011568
TCONS_00023031 mRNA upstream 83527 33226955 ~ 33230039 (+) True XLOC_011567
TCONS_00023029 mRNA upstream 111726 33158350 ~ 33201840 (+) False XLOC_011566
TCONS_00023018 mRNA upstream 683283 32622933 ~ 32630283 (+) False XLOC_011558
TCONS_00023037 mRNA downstream 1049 33340675 ~ 33374538 (+) False XLOC_011571
TCONS_00023038 mRNA downstream 1084 33340710 ~ 33374440 (+) True XLOC_011571
TCONS_00023039 mRNA downstream 35843 33375469 ~ 33386590 (+) True XLOC_011572
TCONS_00023040 mRNA downstream 75693 33415319 ~ 33425978 (+) False XLOC_011573
TCONS_00023041 mRNA downstream 75718 33415344 ~ 33430693 (+) False XLOC_011573
TCONS_00023034 other upstream 15096 33298348 ~ 33298470 (+) True XLOC_011569
TCONS_00023028 other upstream 140413 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023027 other upstream 611745 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023026 other upstream 661061 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023025 other upstream 682052 32627924 ~ 32631514 (+) True XLOC_011558
TCONS_00023050 other downstream 245720 33585346 ~ 33585462 (+) True XLOC_011577
TCONS_00023073 other downstream 2575384 35915010 ~ 35915126 (+) True XLOC_011591
TCONS_00023075 other downstream 3274689 36614315 ~ 36614432 (+) True XLOC_011593
TCONS_00023082 other downstream 3914122 37253748 ~ 37281313 (+) True XLOC_011598
TCONS_00023083 other downstream 3932393 37272019 ~ 37272133 (+) True XLOC_011599

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00003761 True 3324 mRNA 0.60 16 CM030121.1 17629286 ~ 17640891 (+)