RNA id: TCONS_00023037


Basic Information

Item Value
RNA id TCONS_00023037
length 5906
RNA type mRNA
GC content 0.43
exon number 35
gene id XLOC_011571
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33340675 ~ 33374538 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTCTACTCGTAAGCATGAATCAAAGGTTTTGTGTACTAACCATCGCTAAAGTCATTCTCCACACAGCAGCTCTTCCAGCGTGAGTTGATAAGAATCGGGTCACGTGACGCAGTGGCTCTCATAGTTCGTCCGTTCACTGTCGTCGGCGCTTTATCTCATCTCACCGATCAACCGGCGAACAGCGGGAATTAAACATGTCCATCAGCGAGGATAAGATTAAAAACAAACTTCAGTCTCCAGGGGATGACCTTGTCTTCTTCGTTAATGGAAAAAAGATCACTGAGAAGAATGCAGACCCTGAAATAACACTCTTGACTTATCTTAGAAGAAGCTTGGGTCTGACAGGAACCAAACTGGGATGTGCTGAAGGAGGTTGTGGAGCCTGCACTGTAATGGTCTCCAAATATCATCCAAATCAAAACCGGATTATTCACTATGCCATTAATGCCTGTCTGGCTCCTCTGTGCTCTTTGCATCACTGTGCGGTAACAACCGTGGAGGGCATCGGCAGCGTGGCAAGCAAACTCCATCCCGTACAGGAGCGAATTGCAAAGGCTCACGGCTCACAGTGTGGGTTCTGTACTCCAGGAATTGTGATGTCTATGTACGCTCTTTTAAGAAACAACCCACAACCCACCATGCATGACATTCAGGAGGCTTTTCAAGGAAACTTATGCCGCTGTACTGGTTACAGACCTATTCTAGAAGGCTACAGGACATTCACAAAGGATGGGGGATGTTGTGGTGGGAAAAGTCAGACTAATGGCTGCTGTATGACTAATGGAAACACACAAGAGCATgAAAATTCAGCACATCCAGTTCAGCACTTGTATGACCAATCAGAGTTTATGCCACTGGACCCGACACAAGAGATTATTTTTCCACCTGAGCTTGTGGTGCGTATAAGAAGTTTAATTTTCATATTGGACTATCATAGTAAACACATCTATATTTGTAtcttttacatctatatttgttCTCTGCAGAGTCTGAGTAAACAGACCCAAAGAGAGATGAGGTTCGTTGGGGAGCGAGTGCTTTGGATTCAACCCTGCTCCCTCAAGGAGCTTCTGGAGCTGAAGGCCACATATCCAAATGCCAAACTAGTCGTTGGGAACACAGAAGTTGGCATTGAGATGAAATTCAAAAACCTTCTTTATCCTGTGATTCTGGCACCAGCTTACATTCCAGAACTGAATATCATCCAACACACTCAGGATGGTATTGAGGTTGGCGCATCAGTGACGTTGACTGTGCTGGGGGATGTCCTGCAGTCAGCTGTGAAGAAGTTGCCCGCTTATCAAACTGAGGTTTTTAAGGCTGTTCTAGAGCAGCTGCGCTGGTTTGCAGGACAGCAGATCCGAAATGTTGCAGCTGTTGGTGGAAATATTATGACGGCAAGTCCCATTTCAGACCTCAACCCTGTGTTTATGGCAGCTGGCTGCAAGCTAACAGTGATGTCCAAAGGGGAGAAACGAGTTCTTGAAATGGATGACAAGTTCTTCACTGGTTATCGTAAGACTGCTTTGAAGCCAGAGGAGATTCTTTTGTCCATTGAGATTCCATACACAAAAAAGGGCCAGTACTTCTCAGCCTTCAAGCAATCCCCTCGCAAAGAGGATGATATCTCTATTGTCACGTGTGGGATGAATGTATATTTCAAGGAGCAATCCAATACAGTACAGAGTATCCGAATAAGCTATGGAGGAATGGCCCCTGTCACTGTTCTTGCTACGGCCACATGCAACAAGTTGCTTAACAGGCAATGGAATGAAGATCTTCTTGAGGAAGCCTGCAGCTCATTGGCTGAGGAGATGAGTCTATCTCCCTCAGCTCCGGGTGGGATGGTGACATACAGGCGCACATTGACTATCAGCCTCTTCTACAAATTCTTCCTCACTGTCCAGCACAAACTGGCTGTGAGCCTGCAGATGGAGggtGTTACCGTTGAAGACATCCAACCTGAGTTTTCCACTGCTACTGAACTCTTCCAAGTGGACACACCATCCAGTGTACAGCTTTATCAGgAAGTTCCTCCAGGTCAAAATGAGGATGATGTTGTGGGGCACCCTATCATACACCTCTCTGCTCTTAAACAGGCCACAGGAGAAGCGGTATACTGTGACGACATGCCTTGCTATGAAAATGAGCTTCATTTGGCTTTAGTCACCAGCACTAAAGCTCATGCCCTCATAAAATCCATTGACACCTCCAGTGCGATGTCAGTTCCTGGAGTGGTTGCATTTATTTCTGCCAAAGACATCCCTGGAAGTAATATGACTGGACCTGTTGTCTATGATGAGACAGTTTTTGCAGATGATAAGGTCACATGCGTTGGACATATAGTGGGGGCCATTGTGGCAGACACTCAGGCTCATGCGCAGAGAGCAGCCAAAGTGGTGAAGATCAGCTATGAGGAACTGAAGCCTGTCATTGTGACCATTCAGGATGCTATTAACAACAAGTCATTCTTCGAGCCAGTTAGAACTATAGAAAAAGGAGATGTTGCACAAGGATTTAAAGACTCTGATCACATCCTGCACGGTGAGATGCACATTGGAGGGCAGGAACAGTTTTATCTGGAGACTAACTGCACGCTGGCTGTCCCTCGTGGAGAGGATGGAGAAATGGAGCTGTTTGTGTCCACACAGTCGGCCTCCAAGACAcaaGCTCTGGTGGCTAAAGCTTTAGGTGTTCCTGCTAATCGGGTGGTGTGTCGTGTGAAGAGAATGGGTGGAGGATTTGGAGGGAAAGAGAGTCGGAGCACCATTCTATCCACTGTGGTTGCTGTTGCCGCACAAAAGGTTAAGTGCCCGGTTCGCTGCATGTTAGATCGTGATGAGGACATGCTGGTCACAGGTGGCCGCCATCCTTTCTTTGGACAGTACAAGGTGGGTTTTATGAAGAATGGAAGAGTGATGGCACTTGAGGTGACGCTCTACAGCAATGCAGGCAATTCACTGGACCTGTCATTGTCAATCCTGGAGAGGGCGCTGTTCCACATGGATAACTCCTACAACATTCCTAACATTTGTGGCACAGGCTACATGTGTAAAACCAACCTGCCGTCTAATTCTGCATTCAGAGGCTTTGGTGGGCCGCAGGGCATGATGATCGCAGAGAGCTGGATGAGTGATGTGGCCTTGAGCTGCGGTCTGCCTGCCGAAGAGGTGAGGAGGATGAACATGTATAATGAGGGAGATCTCACACACTTTAATCAACGTCTGGACCAGTTCACCATCGCTCGCTGCTGGGAGGAGTGCATGCAGCTCTCAGACTTCAACAAGCGCAAGGATGCTGTGGAGAAATACAACagGCAGCACCGCTGGACCAAGAGAGGGCTGTCCATCATTCCCACCAAATTTGGCATCAGCTTTACTGCTGTTTTCCTCAACCAGGCAGGGGCATTGGTACATGTGTACTCAGATGGGTCTGTACTGCTAACTCATGGTGGAACAGAAATGGGGCAAGGTCTGCACACAAAAATGGTCCAGGTGGCTAGTAAAACACTTGAAATCCCCTGCACAAAGATTCACATTACAGAGACCAGCACTAGCACAGTTCCCAACACCAGCCCTACGGCCGCATCCGCCTCCTCTGACCTCAACGGGATGGCCGTCTATAATGCTTGCCAGACTATACTACAGAGACTTCAGCCTTTTAAAGAAAAGAACCCCAAAGGCTGCTGGGAAGACTGGGTCACAGCAGCCTACTTTGACAGAGTAAATCTGTCTGCCAATGGATTCTACAAGACTCCAGATCTTGGTTATGATTTTGACACCAACTCAGGAAGGCCTTTTAACTACTTCAGTTATGGTGTGGCCGTCTCAGAAGTGGAGATAGACTGTCTAACTGGCAGTCATAAGAATCTTCATACGTCCATAGTGATGGATGTGGGCAAGAGTTTAAATCCAGCACTGGACATTGGACAGGTAGAAGGTGGGTTCATGCAAGGCTTAGGTCTGTTCACGCTAGAGGAACTTCGCTACTCTCCTGACGGTTACCTATATACTCGTGGACCTGGCATGTATAAGATTCCTGCTTTTGGGGATATTCCCAGTGAATTAAAGGTTTCGCTGCTCAGAGATGCTCCAAATGACAAAGCCATCTTTTCTTCAAAGgctGTGGGTGAACCTCCTCTCTTTCTGGCGGCCTCAGTGTTTTATGCCATTAAAGATGCCATCACAGCTGCCAGGGCTGAGTCTGGACTGACCGGACCCTTCAGATTGGACAGCCCTGCCACTCCTGAACGCATACGAAATGCCTGTGAAGATAAGTTTACCAAATTGtgtccTCCTGCGGATCCTGGCACCTTTATTCCATGGGCAGTGCAGGTCTGAGACTCAGCAAACTCagtttaaagtcaacatgaaatcagTCACTACGTACTTTACTATTGCACATTCCTGGTCATGTGCAATGATTCATTGCTGCTTATTGTtccaaggaaaaaaaaatgtttgtctaattAATCTCCTAATCAAAATGTTCCAGCTTACTGTTCGCCTGAAACAACTTTGTTTTCCTGCTGACACAGGCTGTTAGATAGatatcaaaaaacaaataagatcCAGAAGTTTGCGTTCATATCATTAAAAAtaacctgtttctaaatggtctgtctctcaAAGTGACGAGGACGTATCCCCCTACTGGTTGCTACCCCCACTGCAAATGACTGTTTAGCATGGAAAATTTGGTCTAGTTTCCAAGTGAATAAATTCAAGTCTTTTCTTTTCAAGCATCCCGTTTTATTGAGAAATATGATATATTACACAAGTAAAATTGTTTGCAAAAGGAtattcatgttgactttaaaagtattaatattGTATTCAACATGAGCATGATAAATACATTGTAATTGCGAAAGAGAGACTGAGGATTTTGTACTGAGCATTTTACTGTGAAAACATaagcttttgtgcttttatgacCTCTCAATGAAGCTTTAATAATATGAATGTGTAATGAAGTATAAAAAAGTGCACTTAGTAATTGTTTCATCACCTATGATTATTTTGGTAACTAAAGCTTTCTGATGTTTCTCACACATTTTTGTTCATAACTATCTATTCGGAGTTTATACTTtactattaagtttttttcttaatTCTGAGTTCATATATTGCAATTATTACTTCTTTTTAATTGCatctttatttctcacaattattCGTTTAAAGGATCTCTCAAAATTTTGTCTATATTTCTCACAAATCTGAGTTCATCTTATAATTCAGATGAGTATTCTCAGAATAACAATTCCCTCTCAATTCAGCGAAGATGCAAACTTTCAAAGGATTTAAAGTTACAACCACCTTTTTTCTCGTGacaattaattatttactcaattattttctttttactttgaaGTATTGAATATTGATTATATGATACtgacaagtaaataaattatgtttttttccaATATACATAGTAAATTATATTTATGATTCACACTAGTCTACAGTGATTGTCAAATAATTGTAATTTGTTCAACATGATTCAGAAAATTGCATTGTGTATTCATATGTGCTGTAAGCAACATGTTGAATCTTGTAACAAATGACAATTATTGCTTTGAAATGTATCAAGAGTTGTTACTGGTAAAGGATTTTATAGCATATACATATTGAATGAGTCACTTCAAAACACctcattgtataaaataaaacatttgttcttACATTTACACAAGACTGATACCTTATTTCTAAGTTTACAATAAAAGTGTTTGTTTGGCATCGAAAATCTCTTCATGAGTGAGTTTCTGGATGTTTTTTTTGTTCCCCTATAACCTCATTCCAGTCACTGAATGGCAGAAAAATGTGTGACGTAATGATTCAAACTGTAAATGGAGAAGATTACACTTAATTTACATCTAGGAGGATGACTGTTGG

Function

GO:

id name namespace
GO:0009115 xanthine catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0043546 molybdopterin cofactor binding molecular_function
GO:0005506 iron ion binding molecular_function
GO:0030151 molybdenum ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0004854 xanthine dehydrogenase activity molecular_function
GO:0004855 xanthine oxidase activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0071949 FAD binding molecular_function

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00230 Purine metabolism
ko00232 Caffeine metabolism
ko00983 Drug metabolism - other enzymes
ko04146 Peroxisome
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-070719-9 Predicted to enable xanthine dehydrogenase activity. Predicted to be involved in xanthine catabolic process. Predicted to be located in peroxisome. Predicted to be active in extracellular space. Is expressed in neural crest cell and xanthoblast. Human ortholog(s) of this gene implicated in several diseases, including Lesch-Nyhan syndrome; cardiovascular system disease (multiple); chronic kidney disease; hyperuricemia; and xanthinuria. Orthologous to human XDH (xanthine dehydrogenase).

Ensembl:

ensembl_id ENSDART00000184396

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023030 lncRNA upstream 146654 33184337 ~ 33194021 (+) True XLOC_011566
TCONS_00024476 lncRNA upstream 218879 33120580 ~ 33121796 (+) True XLOC_011565
TCONS_00024475 lncRNA upstream 220165 33118538 ~ 33120510 (+) True XLOC_011564
TCONS_00024719 lncRNA upstream 229509 33109706 ~ 33111166 (+) True XLOC_011563
TCONS_00024474 lncRNA upstream 230757 33102503 ~ 33109918 (+) False XLOC_011563
TCONS_00023045 lncRNA downstream 59028 33433566 ~ 33436811 (+) False XLOC_011574
TCONS_00024477 lncRNA downstream 803654 34178192 ~ 34182830 (+) True XLOC_011579
TCONS_00024478 lncRNA downstream 894582 34269120 ~ 34287056 (+) True XLOC_011582
TCONS_00024720 lncRNA downstream 1259560 34634098 ~ 34675436 (+) True XLOC_011583
TCONS_00023069 lncRNA downstream 1869227 35243765 ~ 35244470 (+) True XLOC_011586
TCONS_00023036 mRNA upstream 1049 33313566 ~ 33339626 (+) True XLOC_011570
TCONS_00023035 mRNA upstream 1195 33311784 ~ 33339480 (+) False XLOC_011570
TCONS_00023032 mRNA upstream 30986 33296436 ~ 33309689 (+) False XLOC_011568
TCONS_00023033 mRNA upstream 36626 33296852 ~ 33304049 (+) True XLOC_011568
TCONS_00023031 mRNA upstream 110636 33226955 ~ 33230039 (+) True XLOC_011567
TCONS_00023039 mRNA downstream 931 33375469 ~ 33386590 (+) True XLOC_011572
TCONS_00023040 mRNA downstream 40781 33415319 ~ 33425978 (+) False XLOC_011573
TCONS_00023041 mRNA downstream 40806 33415344 ~ 33430693 (+) False XLOC_011573
TCONS_00023042 mRNA downstream 40835 33415373 ~ 33422875 (+) False XLOC_011573
TCONS_00023043 mRNA downstream 41004 33415542 ~ 33433097 (+) False XLOC_011573
TCONS_00023034 other upstream 42205 33298348 ~ 33298470 (+) True XLOC_011569
TCONS_00023028 other upstream 167522 33158294 ~ 33173153 (+) False XLOC_011566
TCONS_00023027 other upstream 638854 32701705 ~ 32701821 (+) True XLOC_011560
TCONS_00023026 other upstream 688170 32652381 ~ 32652505 (+) True XLOC_011559
TCONS_00023025 other upstream 709161 32627924 ~ 32631514 (+) True XLOC_011558
TCONS_00023050 other downstream 210808 33585346 ~ 33585462 (+) True XLOC_011577
TCONS_00023073 other downstream 2540472 35915010 ~ 35915126 (+) True XLOC_011591
TCONS_00023075 other downstream 3239777 36614315 ~ 36614432 (+) True XLOC_011593
TCONS_00023082 other downstream 3879210 37253748 ~ 37281313 (+) True XLOC_011598
TCONS_00023083 other downstream 3897481 37272019 ~ 37272133 (+) True XLOC_011599

Expression Profile

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