Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00023055 |
| length | 5300 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 23 |
| gene id | XLOC_011579 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 33999630 ~ 34185513 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032324 | molybdopterin cofactor biosynthetic process | biological_process |
| GO:0007529 | establishment of synaptic specificity at neuromuscular junction | biological_process |
| GO:0097112 | gamma-aminobutyric acid receptor clustering | biological_process |
| GO:0098970 | postsynaptic neurotransmitter receptor diffusion trapping | biological_process |
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | biological_process |
| GO:0018315 | molybdenum incorporation into molybdenum-molybdopterin complex | biological_process |
| GO:0072579 | glycine receptor clustering | biological_process |
| GO:0030425 | dendrite | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0099572 | postsynaptic specialization | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061598 | molybdopterin adenylyltransferase activity | molecular_function |
| GO:0061599 | molybdopterin molybdotransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110127-3 | Predicted to enable molybdopterin molybdotransferase activity. Acts upstream of or within glycine receptor clustering. Predicted to be active in several cellular components, including dendrite; postsynaptic membrane; and postsynaptic specialization. Is expressed in head; myotome; rhombomere; spinal cord; and spinal cord interneuron. Human ortholog(s) of this gene implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C. Orthologous to human GPHN (gephyrin). |
| ensembl_id | ENSDART00000127692 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00023045 | lncRNA | upstream | 562819 | 33433566 ~ 33436811 (+) | False | XLOC_011574 |
| TCONS_00023030 | lncRNA | upstream | 805609 | 33184337 ~ 33194021 (+) | True | XLOC_011566 |
| TCONS_00024476 | lncRNA | upstream | 877834 | 33120580 ~ 33121796 (+) | True | XLOC_011565 |
| TCONS_00024475 | lncRNA | upstream | 879120 | 33118538 ~ 33120510 (+) | True | XLOC_011564 |
| TCONS_00024719 | lncRNA | upstream | 888464 | 33109706 ~ 33111166 (+) | True | XLOC_011563 |
| TCONS_00024478 | lncRNA | downstream | 83607 | 34269120 ~ 34287056 (+) | True | XLOC_011582 |
| TCONS_00024720 | lncRNA | downstream | 448585 | 34634098 ~ 34675436 (+) | True | XLOC_011583 |
| TCONS_00023069 | lncRNA | downstream | 1058252 | 35243765 ~ 35244470 (+) | True | XLOC_011586 |
| TCONS_00023070 | lncRNA | downstream | 1093275 | 35278788 ~ 35288741 (+) | False | XLOC_011587 |
| TCONS_00024721 | lncRNA | downstream | 1096013 | 35281526 ~ 35288741 (+) | True | XLOC_011587 |
| TCONS_00023051 | mRNA | upstream | 93142 | 33719415 ~ 33906488 (+) | False | XLOC_011578 |
| TCONS_00023052 | mRNA | upstream | 94191 | 33767890 ~ 33905439 (+) | True | XLOC_011578 |
| TCONS_00023048 | mRNA | upstream | 500607 | 33495194 ~ 33499023 (+) | False | XLOC_011576 |
| TCONS_00023049 | mRNA | upstream | 501041 | 33496067 ~ 33498589 (+) | True | XLOC_011576 |
| TCONS_00023047 | mRNA | upstream | 513600 | 33453689 ~ 33486030 (+) | True | XLOC_011575 |
| TCONS_00023061 | mRNA | downstream | 1119 | 34186632 ~ 34239513 (+) | False | XLOC_011580 |
| TCONS_00023062 | mRNA | downstream | 20654 | 34206167 ~ 34239514 (+) | False | XLOC_011580 |
| TCONS_00023063 | mRNA | downstream | 30373 | 34215886 ~ 34239155 (+) | True | XLOC_011580 |
| TCONS_00023064 | mRNA | downstream | 58832 | 34244345 ~ 34254233 (+) | True | XLOC_011581 |
| TCONS_00023065 | mRNA | downstream | 620384 | 34805897 ~ 34807219 (+) | False | XLOC_011584 |
| TCONS_00023050 | other | upstream | 414168 | 33585346 ~ 33585462 (+) | True | XLOC_011577 |
| TCONS_00023034 | other | upstream | 701160 | 33298348 ~ 33298470 (+) | True | XLOC_011569 |
| TCONS_00023028 | other | upstream | 826477 | 33158294 ~ 33173153 (+) | False | XLOC_011566 |
| TCONS_00023027 | other | upstream | 1297809 | 32701705 ~ 32701821 (+) | True | XLOC_011560 |
| TCONS_00023026 | other | upstream | 1347125 | 32652381 ~ 32652505 (+) | True | XLOC_011559 |
| TCONS_00023073 | other | downstream | 1729497 | 35915010 ~ 35915126 (+) | True | XLOC_011591 |
| TCONS_00023075 | other | downstream | 2428802 | 36614315 ~ 36614432 (+) | True | XLOC_011593 |
| TCONS_00023082 | other | downstream | 3068235 | 37253748 ~ 37281313 (+) | True | XLOC_011598 |
| TCONS_00023083 | other | downstream | 3086506 | 37272019 ~ 37272133 (+) | True | XLOC_011599 |
| TCONS_00023087 | other | downstream | 3268163 | 37453676 ~ 37453807 (+) | True | XLOC_011602 |
