Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00023066 |
| length | 1524 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 3 |
| gene id | XLOC_011584 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 34805897 ~ 34808165 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046532 | regulation of photoreceptor cell differentiation | biological_process |
| GO:1902866 | regulation of retina development in camera-type eye | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0032922 | circadian regulation of gene expression | biological_process |
| GO:0031573 | intra-S DNA damage checkpoint | biological_process |
| GO:2000495 | regulation of cell proliferation involved in compound eye morphogenesis | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0008593 | regulation of Notch signaling pathway | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0140110 | transcription regulator activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020910-1 | Predicted to enable protein dimerization activity. Involved in BMP signaling pathway. Acts upstream of or within several processes, including mitotic intra-S DNA damage checkpoint signaling; regulation of Notch signaling pathway; and regulation of cell proliferation involved in compound eye morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including brain; eye; immature eye; mesoderm; and neural crest. Orthologous to human ID2 (inhibitor of DNA binding 2). |
| ensembl_id | ENSDART00000077626 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024720 | lncRNA | upstream | 130484 | 34634098 ~ 34675436 (+) | True | XLOC_011583 |
| TCONS_00024478 | lncRNA | upstream | 518864 | 34269120 ~ 34287056 (+) | True | XLOC_011582 |
| TCONS_00024477 | lncRNA | upstream | 623090 | 34178192 ~ 34182830 (+) | True | XLOC_011579 |
| TCONS_00023045 | lncRNA | upstream | 1369109 | 33433566 ~ 33436811 (+) | False | XLOC_011574 |
| TCONS_00023030 | lncRNA | upstream | 1611899 | 33184337 ~ 33194021 (+) | True | XLOC_011566 |
| TCONS_00023069 | lncRNA | downstream | 435600 | 35243765 ~ 35244470 (+) | True | XLOC_011586 |
| TCONS_00023070 | lncRNA | downstream | 470623 | 35278788 ~ 35288741 (+) | False | XLOC_011587 |
| TCONS_00024721 | lncRNA | downstream | 473361 | 35281526 ~ 35288741 (+) | True | XLOC_011587 |
| TCONS_00024722 | lncRNA | downstream | 748147 | 35556312 ~ 35557562 (+) | True | XLOC_011590 |
| TCONS_00023079 | lncRNA | downstream | 2419825 | 37227990 ~ 37235070 (+) | True | XLOC_011596 |
| TCONS_00023064 | mRNA | upstream | 551687 | 34244345 ~ 34254233 (+) | True | XLOC_011581 |
| TCONS_00023062 | mRNA | upstream | 566406 | 34206167 ~ 34239514 (+) | False | XLOC_011580 |
| TCONS_00023061 | mRNA | upstream | 566407 | 34186632 ~ 34239513 (+) | False | XLOC_011580 |
| TCONS_00023063 | mRNA | upstream | 566765 | 34215886 ~ 34239155 (+) | True | XLOC_011580 |
| TCONS_00023055 | mRNA | upstream | 620407 | 33999630 ~ 34185513 (+) | False | XLOC_011579 |
| TCONS_00023067 | mRNA | downstream | 288859 | 35097024 ~ 35223482 (+) | True | XLOC_011585 |
| TCONS_00023068 | mRNA | downstream | 435588 | 35243753 ~ 35247374 (+) | False | XLOC_011586 |
| TCONS_00023071 | mRNA | downstream | 554686 | 35362851 ~ 35375448 (+) | True | XLOC_011588 |
| TCONS_00023072 | mRNA | downstream | 623559 | 35431724 ~ 35437222 (+) | True | XLOC_011589 |
| TCONS_00023074 | mRNA | downstream | 1780116 | 36588281 ~ 36589605 (+) | True | XLOC_011592 |
| TCONS_00023050 | other | upstream | 1220458 | 33585346 ~ 33585462 (+) | True | XLOC_011577 |
| TCONS_00023034 | other | upstream | 1507450 | 33298348 ~ 33298470 (+) | True | XLOC_011569 |
| TCONS_00023028 | other | upstream | 1632767 | 33158294 ~ 33173153 (+) | False | XLOC_011566 |
| TCONS_00023027 | other | upstream | 2104099 | 32701705 ~ 32701821 (+) | True | XLOC_011560 |
| TCONS_00023026 | other | upstream | 2153415 | 32652381 ~ 32652505 (+) | True | XLOC_011559 |
| TCONS_00023073 | other | downstream | 1106845 | 35915010 ~ 35915126 (+) | True | XLOC_011591 |
| TCONS_00023075 | other | downstream | 1806150 | 36614315 ~ 36614432 (+) | True | XLOC_011593 |
| TCONS_00023082 | other | downstream | 2445583 | 37253748 ~ 37281313 (+) | True | XLOC_011598 |
| TCONS_00023083 | other | downstream | 2463854 | 37272019 ~ 37272133 (+) | True | XLOC_011599 |
| TCONS_00023087 | other | downstream | 2645511 | 37453676 ~ 37453807 (+) | True | XLOC_011602 |
