RNA id: TCONS_00023891


Basic Information

Item Value
RNA id TCONS_00023891
length 1522
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_012120
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24869371 ~ 24890932 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCATACAGGCTTTTCTTGGCTTCACACTCTTCTACGTGTCAATGAAACCAGGAAGCGCGAATGAATAAACCGAGTAGTAAACTGTTCGTCTGTTTGTCAGTGAACCTCCTGTCAGTCGCGGGTCCCCGAAACTCTCCTGATCCGCTTTAATCAACACGGCTCTCAACATGCGTCAAAAGATCTTGGTGACTGGAGGAGGAGGATACATCGGCAGCCACTGTGTTGTGGAGCTCATAGAGGCTGGTTTTCATCCTGTGGTCATTGATAACTTCAGTAATGCTGTCAGAGGAGAGGGGGATGTACCTGAGAGCTTGCGGAGGATAGAGAAGTTTATGGATACTCAGATTGAGTTCCATGAGCTCGACCTCCTGGATAAACCTggactggaaaaaatattcaaaatgcACTCTTTCTATGCAGTGATGCACTTTGCAGGTCTGAAAGCTGTGGGTGAATCAGTAGAACAGCCTCTGCGGTACTACAGAGTCAATCTCACAGGAACCATCAATCTGCTGGAGGTGATGCAGTCTCATGGGGTGCGTAATCTGGTGTTCAGCAGCTCCGCCACAGTCTACGGAGACCCTCAAAAACTCCCCATTGATGAGCAGCATCCAGTAGGCGGCTGCACAAACCCCTACGGCAAGACCAAATACTTCATAGAGGAGATGATCAGAGACCAGTGCACAGCGGAGAAGGACTGGAATGCTGTGCTGCTCAGGTACTTCAATCCCATTGGTGCTCACATCTCAGGTCAGATTGGGGAAGATCCGCAGGGAATCCCAAACAACCTTCTGCCTTACGTTGCCCAGGTTGCTATTGGCAGACGAAAACATCTGAATGTGTTTGGAAATGACTACAGCACACCTGATGGGACAGGTGTGAGAGATTACATCCATGTTGTTGACTTGGCAAAAGGCCACATTGCTGCAGTCAGAAAACTGAAGGACAGCTGTGGGTGTAAAgtttatAACCTGGGCACGGGCACAGGGTACTCAGTGCTGCAGATGGTCAGTGCCATGGAAAAAGCTTCAGGTCGAAAGATTGCATATCAGATTGCCCCACGCCGGAGCGGTGATGTGGCCTCCTGCTATGCAGATGCTAGTCTGGCGGAGAAAGAGCTGGGTTGGAAGGCTGAATTCGACCTGGAGAGGATGTGTGAGGATCTGTGGCGCTGGCAATCCCAGAATCCCACAGGATTCAGTAATGGAACACTACCTTGAAGCTGGATAAATGTAGACCATTTCTAATGGGAAAAAGGGAATTGCACctatgacaaaaaaaatgaagcCAAAGTGGGACAATGaagtctttcattttttttcattgtatgtAAAATCATCTATCTGAAAACTTGAAGCTAAACAAATCATTCCATCTGATTCACTGTCTTTTTCTTCTTGAATGTGCACTGTCATTGCCATCTCACTTTTATTAAAGCACACTGTATGGCGTATTTCTAATGTAGAGTTTTTTTATACTTCCTTATcagtgtgaaaaaataaaaactattgcaTTTGTTT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-6479 Predicted to enable UDP-glucose 4-epimerase activity. Predicted to be involved in galactose catabolic process via UDP-galactose. Predicted to act upstream of or within galactose metabolic process. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in galactose epimerase deficiency. Orthologous to human GALE (UDP-galactose-4-epimerase).

Ensembl:

ensembl_id ENSDART00000193661

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024905 lncRNA downstream 162404 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00023878 lncRNA downstream 176553 24700632 ~ 24703778 (-) False XLOC_012116
TCONS_00023870 lncRNA downstream 309156 24570357 ~ 24571175 (-) True XLOC_012111
TCONS_00024904 lncRNA downstream 561760 24307366 ~ 24318571 (-) True XLOC_012107
TCONS_00023860 lncRNA downstream 561762 24307366 ~ 24318569 (-) False XLOC_012107
TCONS_00023899 lncRNA upstream 297679 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00023901 lncRNA upstream 297679 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023900 lncRNA upstream 297679 25188611 ~ 25197601 (-) True XLOC_012123
TCONS_00024906 lncRNA upstream 353506 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00024907 lncRNA upstream 621992 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00023886 mRNA downstream 1328 24869371 ~ 24879003 (-) False XLOC_012120
TCONS_00023883 mRNA downstream 13367 24855384 ~ 24866964 (-) False XLOC_012119
TCONS_00023882 mRNA downstream 13367 24855384 ~ 24866964 (-) False XLOC_012119
TCONS_00023884 mRNA downstream 13604 24855678 ~ 24866727 (-) False XLOC_012119
TCONS_00023881 mRNA downstream 41404 24837682 ~ 24838927 (-) True XLOC_012118
TCONS_00023892 mRNA upstream 824 24891756 ~ 24916889 (-) True XLOC_012121
TCONS_00023893 mRNA upstream 26418 24917350 ~ 24919297 (-) False XLOC_012122
TCONS_00023895 mRNA upstream 35218 24926150 ~ 24937879 (-) False XLOC_012122
TCONS_00023898 mRNA upstream 41865 24932797 ~ 24938845 (-) True XLOC_012122
TCONS_00023902 mRNA upstream 406050 25296982 ~ 25303486 (-) True XLOC_012125
TCONS_00023885 other downstream 13678 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023856 other downstream 1213853 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023840 other downstream 1954994 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023839 other downstream 2094040 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023820 other downstream 2869663 22002857 ~ 22010668 (-) False XLOC_012077
TCONS_00023894 other upstream 26418 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023896 other upstream 38211 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023897 other upstream 41759 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023912 other upstream 621992 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023914 other upstream 694555 25585487 ~ 25586858 (-) True XLOC_012132

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00011080 True 1647 mRNA 0.52 11 CM030133.1 9575129 ~ 9581745 (+)