RNA id: TCONS_00023896


Basic Information

Item Value
RNA id TCONS_00023896
length 921
RNA type nonsense_mediated_decay
GC content 0.47
exon number 6
gene id XLOC_012122
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24917350 ~ 24938845 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACagtatcttttacagtctatgaacCACACGAGAAGCGGCACAGGGATTTTTCCAGATTCTTGTATTTGTTGTTCAGATGTGGATTTTCGATATATTTTCTTAGATAGCCTACATGTTTAATTGTggatttaaagcatgggTAAAGTGTCGTTTTGAACCTAATCCGCGGATATGTCCGTCAGAAAAGAAGTATTCCAGTCTAAGGTCCTGCAAAGACTGTATGCTGCAGCACAAGGTCCAAGTGTGTTACAACCTGCTGCACAGGAGAGCAGTGCACTTGCACCTGTGCCACCTGTACAAAAATCTCAGTCCATCCCATCCAACACATCAGGTAATGTGAAGAGAACAGCTGTGCAGGGTAAAAAGCTCTACACTGTACTTCCTCCTCCTGAAGGCTACTTCATTACTAGCGGGGATAATTCAGTCACAGTGTCCAATCCAGATCCCACTGACTCTGAGGACAACCCAGCTGATGCTGGTGATCATGAGTTACATAAgaagaggaaaaggaggagaaagaaaaaagtgtttcccagtgctacAGCAGAAGTATCCACCCTTCCAGCAGAGGGCGATGTTGAGGGCCAGGAAGATGTTGCACTTCCCCATGATGGAGATGACACTGGAAGCTCATTGAGCACAGAGAGACTGAGCAAGAACAGAAAGAGGAAGATGAAGAAGAAACGCCACAAAGAGAAACTCCTCGCCCTTGGACTGGTGCCTCAGACGAGAGCTGTCGAATTCACATTCGCACAGAAAGATGAGGGGAATTCAGAGGAGGTGCTAGACTTTCTTCAGACAACCTTGGAGATCTACCTCTCTGACCGCAAGTCCTCtgGCTCCAGTGTAGAAAGTAGCCCCCGTCTCTCGCTTTCTGCAGCAGAGGCTCTATTTTCTCGTCTCTCAGACTCAACGCTGCC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156696

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024905 lncRNA downstream 211216 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00023878 lncRNA downstream 225365 24700632 ~ 24703778 (-) False XLOC_012116
TCONS_00023870 lncRNA downstream 357968 24570357 ~ 24571175 (-) True XLOC_012111
TCONS_00024904 lncRNA downstream 610572 24307366 ~ 24318571 (-) True XLOC_012107
TCONS_00023860 lncRNA downstream 610574 24307366 ~ 24318569 (-) False XLOC_012107
TCONS_00023899 lncRNA upstream 251076 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00023901 lncRNA upstream 251076 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023900 lncRNA upstream 251076 25188611 ~ 25197601 (-) True XLOC_012123
TCONS_00024906 lncRNA upstream 306903 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00024907 lncRNA upstream 575389 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00023893 mRNA downstream 9846 24917350 ~ 24919297 (-) False XLOC_012122
TCONS_00023892 mRNA downstream 12254 24891756 ~ 24916889 (-) True XLOC_012121
TCONS_00023891 mRNA downstream 38211 24880331 ~ 24890932 (-) True XLOC_012120
TCONS_00023888 mRNA downstream 38215 24880322 ~ 24890928 (-) False XLOC_012120
TCONS_00023902 mRNA upstream 359447 25296982 ~ 25303486 (-) True XLOC_012125
TCONS_00023903 mRNA upstream 366136 25303671 ~ 25326296 (-) False XLOC_012126
TCONS_00023904 mRNA upstream 370631 25308166 ~ 25326685 (-) True XLOC_012126
TCONS_00023905 mRNA upstream 390816 25328351 ~ 25331447 (-) False XLOC_012127
TCONS_00023906 mRNA upstream 391405 25328940 ~ 25330775 (-) False XLOC_012127
TCONS_00023885 other downstream 62490 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023856 other downstream 1262665 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023840 other downstream 2003806 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023839 other downstream 2142852 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023820 other downstream 2918475 22002857 ~ 22010668 (-) False XLOC_012077
TCONS_00023912 other upstream 575389 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023914 other upstream 647952 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023915 other upstream 650090 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023928 other upstream 926770 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023940 other upstream 1778625 26716160 ~ 26720994 (-) True XLOC_012146

Expression Profile

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