RNA id: TCONS_00023900


Basic Information

Item Value
RNA id TCONS_00023900
length 1109
lncRNA type read_through
GC content 0.44
exon number 2
gene id XLOC_012123
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25188611 ~ 25197601 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGTGCGCTGTTGTCACTTGCCACGTACAGCGGAATCCAACGGGAAAAGCGCAACCGCCCCATCAGGCACAGCTGTAGAAACCTTCTCAAGAAATGTCATATCAATGCGCCAGCGTCAGACAGTAAACTTCACAACATGGACAAACTGCTGCAAGCACATCCATTTGTCGCTGAACATACGCGCGTTACAAATATCCAAACCTAACGTTAATTGACTTTCAGTAGATTCTCAAGTGTTTAGGAATTTCATGCGCATGGTTTATCCAATCTACTCACCATTTTTTggagataaataaatattagattCCGTCTACGCCGCAACACGAGATTAGTTACAGAGCAGATCCAACATCATAAATATTCTCTGCATCATTTTAAGGACTGTAGGCAACTTTTCCACTGCTTTTTCCAAACGCGATCCAACCACTCCCTGGCCCCGCCCTCCGCTGATCTCTCATTGGTTCAGCCTTTTGTTGCCGTTTTTTGATTGGTTTCAAGTCAAGTCGATCAGATTCTCCGGGTCGATGGACACACGCGTTCCAATGTGTCACGTGATGAGACTCGAACCGCTCTACTGCTTATGCTTTACCACACATCCAGGATATGCATGTGAAGGGTGTGCTCATCTCCAGGAGCAGTGTCACCATAGGGAGGAAATGACCCTGCCAGTTCCACACAACCGCCCCTGCAAACCCCGCCAGGGCGAAGAAGTGGTGAACAGCTAACGGCAGGTCAAAGGAACGAAACACCACATTGGACATGTGGAGGGCCATGTTTTCAAACAGGAAGAAGCCCGTAGAAGTTAGAATGTTGAACCAGGACCAGTCTTCCTGTCCGAGAATCTTATCAGAGAAGAGAACAGATTCCTCCATGAGGGCCCGAAGACCTGCCACAATGCCCTGAATGCCAAACACAGCCCGTGTTGCAGCCAAATCCCAGAAAACCTAGAAAATTTTTAAATGGTAGAACatgttaatgattttttaataaagaatttAATAAAGGTCTATTATGATTCAAAAGAGATACATAAAAGAagtgaaatttattttattttagatatttttcgaTTAATATTTATGTTGCTTCAATGCTgtcttattcaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024905 lncRNA downstream 470684 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00023878 lncRNA downstream 484833 24700632 ~ 24703778 (-) False XLOC_012116
TCONS_00023870 lncRNA downstream 617436 24570357 ~ 24571175 (-) True XLOC_012111
TCONS_00024904 lncRNA downstream 870040 24307366 ~ 24318571 (-) True XLOC_012107
TCONS_00023860 lncRNA downstream 870042 24307366 ~ 24318569 (-) False XLOC_012107
TCONS_00024906 lncRNA upstream 46837 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00024907 lncRNA upstream 315323 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00024908 lncRNA upstream 387886 25585487 ~ 25586857 (-) False XLOC_012132
TCONS_00023919 lncRNA upstream 413393 25610994 ~ 25615738 (-) True XLOC_012134
TCONS_00023921 lncRNA upstream 441963 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023898 mRNA downstream 249766 24932797 ~ 24938845 (-) True XLOC_012122
TCONS_00023895 mRNA downstream 250732 24926150 ~ 24937879 (-) False XLOC_012122
TCONS_00023893 mRNA downstream 269314 24917350 ~ 24919297 (-) False XLOC_012122
TCONS_00023892 mRNA downstream 271722 24891756 ~ 24916889 (-) True XLOC_012121
TCONS_00023891 mRNA downstream 297679 24880331 ~ 24890932 (-) True XLOC_012120
TCONS_00023902 mRNA upstream 99381 25296982 ~ 25303486 (-) True XLOC_012125
TCONS_00023903 mRNA upstream 106070 25303671 ~ 25326296 (-) False XLOC_012126
TCONS_00023904 mRNA upstream 110565 25308166 ~ 25326685 (-) True XLOC_012126
TCONS_00023905 mRNA upstream 130750 25328351 ~ 25331447 (-) False XLOC_012127
TCONS_00023906 mRNA upstream 131339 25328940 ~ 25330775 (-) False XLOC_012127
TCONS_00023894 other downstream 250732 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023897 other downstream 250927 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023896 other downstream 251076 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023885 other downstream 321958 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023856 other downstream 1522133 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023912 other upstream 315323 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023914 other upstream 387886 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023915 other upstream 390024 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023928 other upstream 666704 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023940 other upstream 1518559 26716160 ~ 26720994 (-) True XLOC_012146

Expression Profile

//