RNA id: TCONS_00024906


Basic Information

Item Value
RNA id TCONS_00024906
length 584
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_012124
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25244438 ~ 25246610 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAACAGCCTCCGAGGGAAGAAATGACGTCGTCAACGCCAGATGAAAAGAAAGATTGCATCATCAGAGGTCTTGTACTGAACAGAGTGTGAGGGTGGAAACCGGGAGTCAACCATCTCCTCGCTGGAGCCAAACTCCACGACCTCCACAAAACTTAACGGTACACTCCACTTGAGCAAGAAACGCTGTCCTGAGGGAACCCCTTCACCTCCAGCTCCAACACTCACACCATCCTGAGATGGCCTGGAGGACAGAAACATGGCATTTATGAAGGAACAAGGTACAACTCAGTagatttaaaatttagttttggTAGTAATGCTGTGCTAAACAGTTCAGATtgacagttattagagataataAATGCCTGCAATGGGTCATACCGCCGGTTGGGGGTGGCACACATGAGCACATCGTTCAGGAGAAAGACTCGCCGTTCTTTAGTCTTAATGATCTCCCCTCGATCATTATAAACGGTTTCCACCATGTCATCAGACCGAATCAGATAACGGCTGCCGCTGCTCAGCAGCTGAGAGAGATAAATGGGAGAGAAGCAGAAACAGCAATAAAAGGATTGAGATAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023901 lncRNA downstream 46837 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023900 lncRNA downstream 46837 25188611 ~ 25197601 (-) True XLOC_012123
TCONS_00023899 lncRNA downstream 53366 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00024905 lncRNA downstream 526511 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00023878 lncRNA downstream 540660 24700632 ~ 24703778 (-) False XLOC_012116
TCONS_00024907 lncRNA upstream 266314 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00024908 lncRNA upstream 338877 25585487 ~ 25586857 (-) False XLOC_012132
TCONS_00023919 lncRNA upstream 364384 25610994 ~ 25615738 (-) True XLOC_012134
TCONS_00023921 lncRNA upstream 392954 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023923 lncRNA upstream 403401 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023898 mRNA downstream 305593 24932797 ~ 24938845 (-) True XLOC_012122
TCONS_00023895 mRNA downstream 306559 24926150 ~ 24937879 (-) False XLOC_012122
TCONS_00023893 mRNA downstream 325141 24917350 ~ 24919297 (-) False XLOC_012122
TCONS_00023892 mRNA downstream 327549 24891756 ~ 24916889 (-) True XLOC_012121
TCONS_00023891 mRNA downstream 353506 24880331 ~ 24890932 (-) True XLOC_012120
TCONS_00023902 mRNA upstream 50372 25296982 ~ 25303486 (-) True XLOC_012125
TCONS_00023903 mRNA upstream 57061 25303671 ~ 25326296 (-) False XLOC_012126
TCONS_00023904 mRNA upstream 61556 25308166 ~ 25326685 (-) True XLOC_012126
TCONS_00023905 mRNA upstream 81741 25328351 ~ 25331447 (-) False XLOC_012127
TCONS_00023906 mRNA upstream 82330 25328940 ~ 25330775 (-) False XLOC_012127
TCONS_00023894 other downstream 306559 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023897 other downstream 306754 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023896 other downstream 306903 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023885 other downstream 377785 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023856 other downstream 1577960 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023912 other upstream 266314 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023914 other upstream 338877 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023915 other upstream 341015 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023928 other upstream 617695 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023940 other upstream 1469550 26716160 ~ 26720994 (-) True XLOC_012146

Expression Profile

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