RNA id: TCONS_00023902


Basic Information

Item Value
RNA id TCONS_00023902
length 1255
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_012125
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25296982 ~ 25303486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATACATAACTGATATGTACATCACATTCAACCTATTTGCATTCATTAGTCTGTTTAAAAGACGGTTGTTAGAAGTGTGGGCAGCacaaatacagggagaacattcaaactccaaactgacccagctaaggctcaaaccagcgaccttttttctCCACTGCGGCGCCCCCGAAGTACATAATGAATCCAGAGTGTCAAAATGTCAATCAGATTTTACTCCAGTTCACCAGAGGGCGACATACCAAACCTCAGTGGTAAAGAACACAGCCTGAAGTCAAAGGTTACACGCAAGATGGCGGCCAGCAAACGTGTTCTTTATGTTGgtGGTCTTGCAGAGGAGGTGGATGAGAAAGTGCTGCACGCTGCGTTTATTCCTTTCGGTGACATTACAGATATTCAGATCCCGTTAGATTATGAGACAGAGAAACACAGAGGCTTTGCTTTTATCGAGTTCGAGCTGGCAGAGGATTCAGCAGCTGCTATTGATAACATGAACGAGTCTGAGCTGTTTGGCAGAACCATCAGGGTGAACATCGCCAAACCCATGAGAATTAAAGAGGGCTCCTCTCGCCCAGTGTGGTCTGACGATGACTGGCTGAAGAAGTTCTCGGGGAAGAAAGCAGAGGAGAGTGAAGAGGCCGAGTCAGCTGCAGAATCAGCAAGTACAGAGACACAAGAGGGAGAACCTCCAGCAAAAAAAGGCAGAACCAATCCTCAAGTCTATATGGATATCAAGATTGGCAACAAACCTGCAGGCCGACTGCGCTTCCTTCTGCGAGCTGATGTTGTGCCTATGACTGCAGAAAATTTCCGTTGTTTGTGCACACATGAGAAAGGCTTTGGATTCAAGGGCAGCAGCTTCCACAGAATCATCCCTCAATTTATGTGCCAGGGTGGAGATTTCACCAACCACAATGGCACTGGGGGGAAATCCATATATGGACGCAAGTTTGAAGACGAGAACTTTGTCCTGAAGCACACCCATGCAGGTCAGCTTTCGATGGCCAATTCTGGTCCCAATACTAACGGTTCACAGTTCTTCATCACTGTTGATAAGACAGACTGGCTGGATGGCAAACATGTGGTGTTCGGAGAGCTTACAGAGGGCATGGATGTGCTCCGGGCCATGGAGGCTCAGGGAACAAAAGATGGCAAACCCAAACAGAAGGTCATCATCTCCAACTGTGGAGAGTATGTTTGAGAtcaacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016018 cyclosporin A binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-050417-167 Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIE (peptidylprolyl isomerase E).

Ensembl:

ensembl_id ENSDART00000162235

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024906 lncRNA downstream 50372 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00023901 lncRNA downstream 99381 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023900 lncRNA downstream 99381 25188611 ~ 25197601 (-) True XLOC_012123
TCONS_00023899 lncRNA downstream 105910 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00024905 lncRNA downstream 579055 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00024907 lncRNA upstream 209438 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00024908 lncRNA upstream 282001 25585487 ~ 25586857 (-) False XLOC_012132
TCONS_00023919 lncRNA upstream 307508 25610994 ~ 25615738 (-) True XLOC_012134
TCONS_00023921 lncRNA upstream 336078 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023923 lncRNA upstream 346525 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023898 mRNA downstream 358137 24932797 ~ 24938845 (-) True XLOC_012122
TCONS_00023895 mRNA downstream 359103 24926150 ~ 24937879 (-) False XLOC_012122
TCONS_00023893 mRNA downstream 377685 24917350 ~ 24919297 (-) False XLOC_012122
TCONS_00023892 mRNA downstream 380093 24891756 ~ 24916889 (-) True XLOC_012121
TCONS_00023891 mRNA downstream 406050 24880331 ~ 24890932 (-) True XLOC_012120
TCONS_00023903 mRNA upstream 185 25303671 ~ 25326296 (-) False XLOC_012126
TCONS_00023904 mRNA upstream 4680 25308166 ~ 25326685 (-) True XLOC_012126
TCONS_00023905 mRNA upstream 24865 25328351 ~ 25331447 (-) False XLOC_012127
TCONS_00023906 mRNA upstream 25454 25328940 ~ 25330775 (-) False XLOC_012127
TCONS_00023907 mRNA upstream 25692 25329178 ~ 25331439 (-) True XLOC_012127
TCONS_00023894 other downstream 359103 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023897 other downstream 359298 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023896 other downstream 359447 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023885 other downstream 430329 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023856 other downstream 1630504 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023912 other upstream 209438 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023914 other upstream 282001 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023915 other upstream 284139 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023928 other upstream 560819 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023940 other upstream 1412674 26716160 ~ 26720994 (-) True XLOC_012146

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_04996555_05001479.mRNA True 616 mRNA 0.45 4 CI01000310 4996555 ~ 5001573 (+)