RNA id: TCONS_00023906


Basic Information

Item Value
RNA id TCONS_00023906
length 896
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_012127
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25328351 ~ 25331447 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGCTTCCAAGGAGTCTTTGGTGAAGTTTGTGATGCAGAAGAGTGACACGGTCAATTTTGTTGTTCACACATCCAGCTTAAAGTCTTCTGAGAGTTATATTCACTGCAAAGTGTATCTTACTGATTTGGGCCTGACCTCTGCCACTAAATTCTGCAACTACAACAAGCGCAAATCCAGTTGGGTTGACCTGGGTGGCCAAACCACGGTGTGTGATTGTTGTGGAAAAAGATGCAGAAGTGCAATTGAGCGCGCAGTATTGCCCGGTATGCTAGAAACTTCCAGTGCGGTGTGTTTTggagaaagttggagctaaaccatgcaggacaccggccctccaggaccaagtttagaCTCCCCTGTTTCTCTAGACCTGACTGCAGTAGTGAGCAGTGGCCAGCTGATTATTAAAGATGAACAGTCCGCACCTCAGACCACACCGCTTCCACTGTCAAACAGCATTTCTACATCCAGCCCTGCCACTGAAACCTTGCCTGATAAAAGATGGATCATGGCAGGTGCCTCTTTCTCTGGGAGCTCGGCCCAAAACCACATGGACGAAGTCACCCATTGGCCTATTCAGCCTATTGGAGGAGGAGTGGTGATCATCAGCCAGGGACAAGGAGCTGATTTATCAATGTGGCTACCAGAATTAACAGGGTTTGAGATAAACCCAGTGGCTCCGTTGGGAATTGGTCATCCAGAAAAACCTGCTGTTGACGTAACCGTTCAGCTTGAAAATTTGATTCCAGATCAAAGTGCATTTAAGAAAAGTCAGGCTGTGAATGAAGCCAAGGTTGATGTTGAAACTGTGGATTCAAATGATTATGTTGTGGAAGATGACTTGAGCATGTGGGATCCAAAAGATTTTTACCTCATGTCTGAGCTTGAAATGAA

Function

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0035804 structural constituent of egg coat molecular_function
GO:0032190 acrosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040824-1 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix.

Ensembl:

ensembl_id ENSDART00000154048

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024906 lncRNA downstream 82330 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00023901 lncRNA downstream 131339 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023900 lncRNA downstream 131339 25188611 ~ 25197601 (-) True XLOC_012123
TCONS_00023899 lncRNA downstream 137868 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00024905 lncRNA downstream 611013 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00024907 lncRNA upstream 182149 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00024908 lncRNA upstream 254712 25585487 ~ 25586857 (-) False XLOC_012132
TCONS_00023919 lncRNA upstream 280219 25610994 ~ 25615738 (-) True XLOC_012134
TCONS_00023921 lncRNA upstream 308789 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023923 lncRNA upstream 319236 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023904 mRNA downstream 2255 25308166 ~ 25326685 (-) True XLOC_012126
TCONS_00023903 mRNA downstream 2644 25303671 ~ 25326296 (-) False XLOC_012126
TCONS_00023902 mRNA downstream 25454 25296982 ~ 25303486 (-) True XLOC_012125
TCONS_00023898 mRNA downstream 390095 24932797 ~ 24938845 (-) True XLOC_012122
TCONS_00023895 mRNA downstream 391061 24926150 ~ 24937879 (-) False XLOC_012122
TCONS_00023908 mRNA upstream 13959 25344734 ~ 25382376 (-) False XLOC_012128
TCONS_00023909 mRNA upstream 13961 25344736 ~ 25382367 (-) True XLOC_012128
TCONS_00023910 mRNA upstream 61749 25392524 ~ 25395395 (-) False XLOC_012129
TCONS_00023911 mRNA upstream 62067 25392842 ~ 25397558 (-) True XLOC_012129
TCONS_00023913 mRNA upstream 219460 25550235 ~ 25563847 (-) True XLOC_012131
TCONS_00023894 other downstream 391061 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023897 other downstream 391256 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023896 other downstream 391405 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023885 other downstream 462287 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023856 other downstream 1662462 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023912 other upstream 182149 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023914 other upstream 254712 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023915 other upstream 256850 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023928 other upstream 533530 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023940 other upstream 1385385 26716160 ~ 26720994 (-) True XLOC_012146

Expression Profile

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