RNA id: TCONS_00023918


Basic Information

Item Value
RNA id TCONS_00023918
length 4920
RNA type mRNA
GC content 0.50
exon number 35
gene id XLOC_012134
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25609826 ~ 25630848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTATGTGTCATTCCAAACTCAGCACAACAACACACTGACACCTCAGCTAGGTTTTCTGACCCGTTTGGGTCGAAAAATCCCTTAACACCTTCACGAATTTTACTGACACGTTCGTAAACACACTAAAAGGCGGATTTTGATCCGGGCGGAGGGTTTATGTCGTAGAATCTGCAGGTTTTGGGTCCGGTTCCGCCCGAATCATGTCCTGCTGTCTGCTGGAGTTCGGTCGGGTCCAGGAGCTCAGACAGGTGCGAGAGTTTCTCTTCCCCAAGCACAACAGCACCGGTCCGGAGGGAGACAAAGCACAAGCAGAGAACGAGTTAACGTGGGATGACTCAGACTGGGGCTCCTGGGACAATCCTGAGGGTAAAGAGGATGGGGCTCAGGCTGAGGAGGAAGAACAACACCAAAGCGCCCCATGGTTGCAGGACTGTGTTGTGTCTCTCTCGCCCTGCACAGATCTGCTGGTCATAGCTCGAGAGCATAAAGCCGCTTTTCTCTCTGCTAAATGGCGGACAGCCGAGAGTGGCCAGGAGGAAATGACCCTCACTGTGACCTGGAGTGGAACTCTAAGTATTGAAGAAGGGGAGTCAATCAATAGTGTTATATGTATTCCACTGGCCAGCCAGAAGAGGAGTTCAACCGGCCGGCCCGATTGGACCTGTATTGTGGTTGGATTCAGCTCAGGTTATGTCCGTTTCTACACAGAGAGTGGAGTTCTTCTATTAGCACAGTTGTTGCATGAAGATCCTGTGCTGCGCCTGAAATGTCGGACTTATGAGATTCCACGTCATCCTGGAGTAACAGAACAGCATGAGGAACTCAGTATTTTGTATCCGGCAGCGCTGGTCACCATCGATGGCTTTAGTCTCTTTCAATCTTTACGTGCCTGTCGAAACCAGGTTGCCCGAGCGGCAGCAGCAGGAAGTGATGTCATCCAGCCACCTCCACTGGCCTATAAAAAGTGGGGCCTGCAAGACATGGACACAATTGCTGACCATTCCAGCATAGGTATTACTACCCTGAGTGTATTTGATCAGATGAAAAATGCCTCAATCCTGGGAGGATTTCATGCTTCGGTTAAAGGAAGCCCTCCTGCTATGAGTCAGTATATTACAGTGGGAGGAGGACCCTACACTGGCTTCTTCTATGCTATAGAGGGCAGCTCTCAGCCTCTGCTTTCCCATGTGGCTCTGGCTGTCGCCAGCAAACTCACATCAGCTCTGTTCAGCGCTGCCAGTGGTTGGTTAGGGTGGAAGAGTAAAAATGAAGAGGAGTCAGTGCAGAAACAGAAACCAAAGGTGGAACCAGCCACAGCCCTTCCTGTTAGATTTGGTCTTCCAGATTCTCGTAGGCATGGCGAGTCTATCTGTCTCTCTCCATGTAACACTATGGCTGGAGTCACAGATGACTTTGGCAGAGTTACACTTTTAGATGTGGCACGAGGCATCGCTATCAGGATGTGGAAGGGTTACCGTGATGCTCAGCTCGGCTGGGTGCAGGTGTCAGAAGCTCGAGGAGAAAGAGATATAGCCACATCTCCCTCTATGCCCCGCCGGCATGCACAGTTCCTGGTGATCTATGCTCCACGCAGGGGAATTTTGGAAGTGTGGGGAACTCAACATGGACCGCGTGTAGGGGCTTTTACTGTGGGCAAACACTGCAGGCTGCTGTATGGAGGTCACAGGTTAATGGGGGTAAACAGTGTAACCAGTCAGGGGTGGCAGATACACACACAGCAGGTGTGTCTGTTTGACCCGGTTAATGGAGCTCTGAGAGCCATCACCATACCATTCCACCTGGCACTCAGTGATAAGAAGAGCGAGCGCGCTAAAGACATGCACCTGCTGAGGAGACTCACCACCCTATTGAGGAGCAGAGAGGTGGAGCCAGCTCTGCTTGAGAGTGAAGCACAAAGTGTGTTATTGGACATTAAACACCCAGCTATTAAAAAACAGGCTCTGGAGTCGCTGCTGTCCAATAAGAATGCACCAGTGTCCTGTTTGACCAGTGTTACTCGTGCATTATTGGCTAGCCTGAAAGAACaagatcCTGAAGCAGTGGATGAATcattgctgcagttttgttcgtCTCAGCTTAAGCTTCTCCAGCTCTATACAGACGTTCAGTTATTGCACACACCAGACACATCACCCACTGAGCCAGAACATCCGTCATTTTCTGGCATTGAAGAGGATCTTGCTCGTGTTGGCCCAGTTTTGCAGCGCTACACAGAGATGAACTCTCGGCCCAGTGTCTCATTTGCTCAAGACTCTAGTGGGCCGCTGCCAGTCCGCACATTTCTGTCTCTGTTAGAGTGGGTGAACGGAGAGCTCAGAGTGATTAAACAACCTGACACTGACTGGACCCAACTAGGTAGTTTTCTGTTCTGGGGTTGTCTGTCTGGTCAGAGTCCTTTACAGAGAGTGTGTGCAACTCTGCAGGAAAGCGGCATCAGCCCTCAGCAGCTACTGTCCTTGCTCTTGACAGTGTGGCTGAACAAAGAGAAGGATGTATTGAAGTGTCCAGATGCCGTCTCACACCTGAAAACACTGCTGTCCACTCTCAGCTCAATAAAAGGAGCAGTGGATGAATCCTGGGATGGTCAGTGTGTCTCCCCCTGGTGGCAGCAAGTGCGCACAGCATGTGTTCAATCTGAGAGCTCAGCCGCTGCACTGCTGGCCGCTCTAGTTGCTCATCATGTAGCCAAGAATGCCATCACCAAACTGGCGGAGAGCAAGtTTCAGGAGGGGTGGGAGTGTGTTTCTCTGGAGCTGGAGCAGTGGGTGGTGTGTATAAAGCAGCTGGAGGATGTTCTCGCTTTGCAGACACTGCTCTGCTTGCCGTCTCCTCAAGGCTCTACCGGGAGCGCTGTTACACGCTGCTCGGTCAAAACACTCTTAGAGAGTGGCAGagGTGGTGTAGCagactgtgtttcaaagctgaTCTTCAGACAAGGTGTTTCTCCTGATGTCCTGAGGGAGATCCTACAGCAGAGGAGAGAGAATGAGCCCACGCAACAGCCTTTACTGCAACGTGGAGAGGGCAAACTAGAGGAgctgctggagtgtgtgtgtcagCGCTTTCCAAACTCTCTATCTCCTGATGTGCTGTTTGCTCACTGTAGCTGGGAAAATGTGGTGCAGTGGAACAAAGACCCAGAGGTGGGGCAGTACTTAGAATGGTCAGTGGAGTTTTTGAAGATGATCTCCAATCCTCACATTCAGTTGGGTGTTTCAGCTATGATGTGGCAGACCTTCATTGTCAAGCGGTTTTCAGCTGCTGCCTTCCTAATTGAAAAGGTGGGAAAGGCACCTAAAGACCGGCTGTGCAGACGGGATGTAGGAATGGGGGATGCGGCTGTGAGGAGTTTCCTGGGCTCCTGTGTGCAGTTGCTGCAGGCTCTGATGGAGgCGGATTCAGCAGTGGAGGAAGTGCCTCCTCCAGATGTGAGTGTGGAGGAAGCGTGGAGCGCTGCAGACGGCCCGGTGTCCATAGTAGAGTTAGCTCTGGATCAGAGATCTGTTCACTATCCTCTCGTTCAGCATCACTGTGTGTTGGCGACTCTTCTGCATGCCGCCATGACCTTCAGTCTGCGGCTGAAGCCGCTCAGTCTGTTCGACAGCAAGGGTAAGAATGCATTCTTCAGAGATTTGGCTTCCATTCAGTTGCTGCCCAGTGGAGATATGGACCCCAACCTGGTGGCCGTGAGACAAGAGtttcTGATGAACGTGTTAACAGGCTGGGTGAAGGTTCTAGCTGAAGCTGAGGAGAACGGTGTGAGAAGCAGCGGTTCTGAAGACACATGGCCACATGTGTGTATGGAGCTCTCATCACTACTGCAGGTCAATACTGACATCCTGCGCAGACACCTCGTCTGTGAGCTCTACAACCAGGGTCTAGACCTGCGGGCAGAGGAGGTGATGATGGAGGTGCAGGACAAGGATGTTCTGGGCTCTCAGCTGCTGGTGTTGACGGGTCAGagactctctttctctctgcttcACTCCCAGTCACAAACCAAACCCAACATGGAGCTGCTGGCTCGTCTGCCACCCACCCTCTGCACGTGGCTGAAGGCTATGGACCCCAGTGAGCTTCGCTGTCCTTCAGTACCTCTTTCCCAGAGCAGTCGACTGATCAGCAAGGTCATCGAGATGCTCCCCGAAAACCATGCGCAGTACAGCCTTGCCCTCCATCTTCTGGAGGCTGTGGACTCTTTACACCAAGAGCCCTGATTTTTGAAAGaatgaaaattatgtttttaattattattattgttattatggacTCGAAAACTTTCCTAGACCTGGAAAACAATGCGGTCAGCAGCATACATAAATGCGTCATCATCGGTAATCTGCTTAACACAGCAAGTTTTAATTTCCCCTCCTACTTGTCACTAACATCAAGAACACTAGCACCTCTTGAGGATGTGCTTTCCCACAATGCCTGTGCACAATGAATGCGTCACAAATAAAGGGCCCGAGTCTCTAGTGTCTAGAGTGTTATTAGGATAAAAACAATGTTCTTGATGTACAATAGTTCTGTAATCACAAAAAAGGCTGTTCTTTACAAGGAGGCCTTAAAATAATATTGTGCTGTAATCAGTGTATTCAGAACATATTAACCTAAGAAGgggtatattttatatttcaaattcTAGATGTTGTTCTTCATTTATTCAGTCCATGATGCATACAGTTATATCTCATTTACGCTGTTTAGTAGTAAATGACTACTACAATGTCATCTgttattgtgtttgttttaaatggaCAACTTTTGGCTGCAAAGTGAGATGAAAGACTTCTATTCGGTAGTGCTCACAATTAATGCAGTCCTGTACCAGCCGTGCCTGGCTGTTCATGTAATATGGCGTAACAGTGATACCAAAAATAAAGGCCATTTCAGAGAA

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030616-610 Predicted to enable GTPase activator activity and hormone activity. Predicted to be involved in regulation of GTPase activity. Predicted to be located in cytoplasm and extracellular region. Human ortholog(s) of this gene implicated in Martsolf syndrome and Warburg micro syndrome 2. Orthologous to human RAB3GAP2 (RAB3 GTPase activating non-catalytic protein subunit 2).

Ensembl:

ensembl_id ENSDART00000151878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024908 lncRNA downstream 23494 25585487 ~ 25586857 (-) False XLOC_012132
TCONS_00024907 lncRNA downstream 87996 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00024906 lncRNA downstream 363741 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00023901 lncRNA downstream 412750 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023921 lncRNA upstream 8716 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023923 lncRNA upstream 19163 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023924 lncRNA upstream 38991 25669839 ~ 25670528 (-) True XLOC_012136
TCONS_00023929 lncRNA upstream 262574 25893422 ~ 25897784 (-) True XLOC_012141
TCONS_00024909 lncRNA upstream 322662 25953510 ~ 25955190 (-) True XLOC_012142
TCONS_00023913 mRNA downstream 46504 25550235 ~ 25563847 (-) True XLOC_012131
TCONS_00023911 mRNA downstream 212793 25392842 ~ 25397558 (-) True XLOC_012129
TCONS_00023910 mRNA downstream 214956 25392524 ~ 25395395 (-) False XLOC_012129
TCONS_00023908 mRNA downstream 227975 25344734 ~ 25382376 (-) False XLOC_012128
TCONS_00023920 mRNA upstream 5105 25635953 ~ 25649079 (-) False XLOC_012135
TCONS_00023922 mRNA upstream 19091 25649939 ~ 25737452 (-) False XLOC_012136
TCONS_00023925 mRNA upstream 146482 25777330 ~ 25831569 (-) True XLOC_012137
TCONS_00023926 mRNA upstream 190540 25821388 ~ 25847551 (-) True XLOC_012138
TCONS_00023927 mRNA upstream 230345 25861193 ~ 25861787 (-) True XLOC_012139
TCONS_00023915 other downstream 21921 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023914 other downstream 23493 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023912 other downstream 87600 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023897 other downstream 672667 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023896 other downstream 672816 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023928 other upstream 233457 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023940 other upstream 1085312 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023944 other upstream 1236843 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023954 other upstream 1572273 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023956 other upstream 1584043 27214891 ~ 27235466 (-) True XLOC_012154

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000312_00095399_00109920.mRNA True 4244 mRNA 0.52 35 CI01000312 95399 ~ 110047 (+)
bowfin (Amia calva) AMCG00004050 True 4575 mRNA 0.62 36 CM030121.1 30782054 ~ 30802209 (+)