RNA id: TCONS_00023929


Basic Information

Item Value
RNA id TCONS_00023929
length 1025
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_012141
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25893422 ~ 25897784 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcaggggtcgacacaacggaatgaaccacctccATTTCTCCATCTTTCGGCTAATTTTCCATCCATTCTACAGATCGCAGCACTGCAGAGCTAGAATAAGGATACCAGCCTGTCAACACTACTGTCAACAGCTTCTGACTGGAAGGTGAGGTTAGCGGAGAGGATTACCAGGACTACCCTCCCCTACATTCAGGATATTGCACCACAGTGAACGCTTATCCCGGACCAGAAATATTCTAAAGGGTGCTACTCACCCCCACCAGGGACTATTCTTCCCATTAACTTCTGGGAAGAGGTAAACAGCATTAAATGCAGTACAGGTTCTGTAGAAGCTTTCTGCCACTGGCCATCAGAATGTTAAACTCTTAAAGGgtcacaatgtatttatttatgtttattttcttagttttttttttttttactttaaaacttataTGCACTATTGTAATTTGAACTCACTATATATACTGCACTCAATTTATATGTGCTCAACATAACTGAGTACACCTCATttcgaaaatgaatatttttttaatcaatttctcagtgaatatcattcatattttggtgcatttgaacaatcagatttatttaaataatattttagtaacatcttcagaaatagaaagataataaatttcaattcatgcaaaatattggggAAGAAATTTGCAAATTACAAAGTTTCaactaaatgtatacatttttctgtttctcttgaattttgggCAAATATCATAAGTCATTTTGTTCGATTATCTCCGGATTTGGGTTTAGTAGTGACCAATCCaatgtatgtgcacaaatataatactgtgaaGCTTCCTATACAAAAATTTTCacttaaatgagagatttgtgagaggtTTTCTTATATATGCTGTGCACTGTGGAGCCAATGCTACAACATTTGTTCGGAGTATATACATGTGAATGATAATAAAGTACTTGACTTGTTTTCTCAAAACATCTCACCTCTTTTCATCATTTTTCACTTGCTGCCAACAGGCAGTCATGTTTAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023924 lncRNA downstream 222894 25669839 ~ 25670528 (-) True XLOC_012136
TCONS_00023923 lncRNA downstream 242555 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023921 lncRNA downstream 244384 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023919 lncRNA downstream 277684 25610994 ~ 25615738 (-) True XLOC_012134
TCONS_00024908 lncRNA downstream 306565 25585487 ~ 25586857 (-) False XLOC_012132
TCONS_00024909 lncRNA upstream 55726 25953510 ~ 25955190 (-) True XLOC_012142
TCONS_00023937 lncRNA upstream 711867 26609651 ~ 26610787 (-) True XLOC_012145
TCONS_00023941 lncRNA upstream 886142 26783926 ~ 26801744 (-) False XLOC_012147
TCONS_00024910 lncRNA upstream 903187 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00024911 lncRNA upstream 1052628 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00023927 mRNA downstream 31635 25861193 ~ 25861787 (-) True XLOC_012139
TCONS_00023926 mRNA downstream 45871 25821388 ~ 25847551 (-) True XLOC_012138
TCONS_00023925 mRNA downstream 61853 25777330 ~ 25831569 (-) True XLOC_012137
TCONS_00023922 mRNA downstream 155970 25649939 ~ 25737452 (-) False XLOC_012136
TCONS_00023920 mRNA downstream 244343 25635953 ~ 25649079 (-) False XLOC_012135
TCONS_00023930 mRNA upstream 579827 26477611 ~ 26538075 (-) False XLOC_012143
TCONS_00023931 mRNA upstream 582723 26480507 ~ 26537928 (-) False XLOC_012143
TCONS_00023932 mRNA upstream 583789 26481573 ~ 26507289 (-) True XLOC_012143
TCONS_00023933 mRNA upstream 692095 26589879 ~ 26604946 (-) False XLOC_012144
TCONS_00023934 mRNA upstream 692883 26590667 ~ 26604549 (-) True XLOC_012144
TCONS_00023928 other downstream 29003 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023915 other downstream 304992 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023914 other downstream 306564 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023912 other downstream 370671 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023897 other downstream 955738 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023940 other upstream 818376 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023944 other upstream 969907 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023954 other upstream 1305337 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023956 other upstream 1317107 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023977 other upstream 2632683 28530467 ~ 28530582 (-) True XLOC_012163

Expression Profile

//