RNA id: TCONS_00024909


Basic Information

Item Value
RNA id TCONS_00024909
length 1534
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id XLOC_012142
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 25953510 ~ 25955190 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCGCGCGAGCTGAGCGGCACTGCAGGATCCATAAGGAGAGGCTGATCACGAGCAACTCCATCTCCAGTTCTCGCCCCGGTGTATCATCCACGCGTCCGCGTCGCTTCAAAAATCCACTTCCAGAAAGAAAAGGAGCGTGCGCGCGAGCGACTGTGGAGATCAAGGATGCGTCACTTCTATCTTTCTCCAAGATCTATTAAAATTGAAAGTGAGAAAGGATATTCGCGGGGAAAAAAGAGAAGCTCTCAGGGGAAGGAAAGCAGAAAAGGAGGGGTAGGAGAGCAAGGGAAACGACGGGGGTACCACGGTCAGAGGCAAAGCAACGAGTCCGCGCGCTCCAGCTCTCAGTGTGGTTTGGATACTGCTAACTGCAGCTCTGAGAgaccccccctctctctctccctcactctCTCGCCATCTCAATGCTCGCAGTCTTTTGCGTTTCGCTGCACCACGTGACCGAAGAATCGAAAGATCGGAACGGGTACGGTAAAAACCAAGGAGAAATGAAATCCGCGCGCGCCGGAGAGAGTCGCCGCAGCGGAGTGGCGACGGGCGGTCTAGCGCAGCCCTACACCTGTGAAGTTCAGCTGAGCACCAGGAAGGGACATTTCCTCAAAGACTTATTGCTAGCCTAAACTATTCTTTTCCTACAGAGAAACACAAACCTTCACTCTGTCGCCTATCTGAACTCAGGGCTGCTGGAGGGAAGCAAAAGTTGCCGGTGCGGACGGTTCAAATTCTCCACAGAAGTTCGGCGCGCCGACAGCGACTGCAGAAGTGGGagtgaaaagaaaaaagacagcCATTTACCGGTGGATATTTTGCCCGGTAGCACCCTGATAAAAGAAAAGAAGCGGAGTCTGTAGGAACCACGGAACGAAGGAAAACAAGTGGGTGATTGAGACTGACAGTGAATAGTGAATGAACTGGCTAACGTCAAATACTATGGCGAATAtgcattttaacaataaaatgttttacacaCAAGGATGAAGAATGATAACCTTCACCTTACAATTAAAGGATATTTCTTGAGCCGAAACTAGCAGAAATATCTCTTAATTGTTTGGTGAAGGCTGTCAGGTCGTCAGCGCGGACCAGTCGGACATGGACAGCGCCACAGCGCCCCTCTAGTGATTCTGGCGAACTGCCTCTCGCGGTGCTCAGAACAACTACAGATCATTTAATAATGAACTACGCAGAATTTTAACTTCCACTGAATGTATTATAAAGGTGATTGGCGTGTTTTTAAGTAAATGcctgttttattttgtttcattttcgtTTCCTCGGGTAATTATATAAAGCATATTTATGTCATTATTTTGCTCCTTTTGCTTCAATTAAAATTAGCTACCAAATTTGGTAGATTACGAATGATTAACTAAGTAACTTGTATTGCAATAGATCCAGTGTAGTAGGTTTTTCACTTCAGTAAATTTATTCTTGGATGTGCTGAGTATGAAAATGtgttaatgttaacaaatatgttaataaataaatatttaaaataaatatgtgaacCAATG

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0048666 neuron development biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0031175 neuron projection development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023929 lncRNA downstream 55726 25893422 ~ 25897784 (-) True XLOC_012141
TCONS_00023924 lncRNA downstream 282982 25669839 ~ 25670528 (-) True XLOC_012136
TCONS_00023923 lncRNA downstream 302643 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023921 lncRNA downstream 304472 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023919 lncRNA downstream 337772 25610994 ~ 25615738 (-) True XLOC_012134
TCONS_00023937 lncRNA upstream 654461 26609651 ~ 26610787 (-) True XLOC_012145
TCONS_00023941 lncRNA upstream 828736 26783926 ~ 26801744 (-) False XLOC_012147
TCONS_00024910 lncRNA upstream 845781 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00024911 lncRNA upstream 995222 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00023948 lncRNA upstream 1026845 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00023927 mRNA downstream 91723 25861193 ~ 25861787 (-) True XLOC_012139
TCONS_00023926 mRNA downstream 105959 25821388 ~ 25847551 (-) True XLOC_012138
TCONS_00023925 mRNA downstream 121941 25777330 ~ 25831569 (-) True XLOC_012137
TCONS_00023922 mRNA downstream 216058 25649939 ~ 25737452 (-) False XLOC_012136
TCONS_00023920 mRNA downstream 304431 25635953 ~ 25649079 (-) False XLOC_012135
TCONS_00023930 mRNA upstream 522421 26477611 ~ 26538075 (-) False XLOC_012143
TCONS_00023931 mRNA upstream 525317 26480507 ~ 26537928 (-) False XLOC_012143
TCONS_00023932 mRNA upstream 526383 26481573 ~ 26507289 (-) True XLOC_012143
TCONS_00023933 mRNA upstream 634689 26589879 ~ 26604946 (-) False XLOC_012144
TCONS_00023934 mRNA upstream 635477 26590667 ~ 26604549 (-) True XLOC_012144
TCONS_00023928 other downstream 89091 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023915 other downstream 365080 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023914 other downstream 366652 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023912 other downstream 430759 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023897 other downstream 1015826 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023940 other upstream 760970 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023944 other upstream 912501 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023954 other upstream 1247931 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023956 other upstream 1259701 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023977 other upstream 2575277 28530467 ~ 28530582 (-) True XLOC_012163

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_04576234_04577598.mRNA False 1058 mRNA 0.40 3 CI01000189 4576156 ~ 4578035 (+)