RNA id: TCONS_00023933


Basic Information

Item Value
RNA id TCONS_00023933
length 3120
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_012144
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26589879 ~ 26604946 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTAGAGCACCTTGGTCTCCATGACAGTCTTGTTATTGTTGTTCAGCAGATAATCATGGATTGATGAAGAATACAGCTGATTTCCACCTcaataaacatttctaaaaactCCGTCGACGAAATGGTGGAGTAGTCCGACTTTTTGTTTCATGTTCGCGGACGGGTTTTTCTCGCCCACACCAGGTTTGTCAGTTCAGGCTCGGCCCAGTGCAGTGCTGGATGCTGCATATTTTCTCACATTTTTCTGAGCTGTGATACATTCTGTGTGGTCGGACTGTGGGTGAAGCATGAGAGACCAGCGGTGGTGCAGCGGCCCGGTCCGGACACTGGAGGCTCGGAGTCGGATCACAGGCTCACAGACGGAGGAGATGCGTATGCTGTAACAGCATCAGGAGGATGATTTCTCGATACAGCCGTCGGCCTGTATCTCACAACCTAGAGATTCGTGGTTTGTCCCGCAGTTGTCTGGACCAGCATCCTCTTCCAGAGGAGGCAGACAATGGTACTGCGCATTCCTCCAGACTCCTGCACAATCTACAGGAGGACATGTCCTTATACAGCAGGTCTGAGGAGTCCTCTGCATCATCCGTCAGATCAGGATGTCAGACACTCACCACAGATGACACTGTTCCGTCTTGGTCTGGTATCCATAGTTACACAGGAACTGGCATCTCGACAGAACGCAGCTCTGTCTTCTCGTGGGGCTACGATGAATTTGATAAAGCCGCTTCCAGGCAGGTCCAGCAGATGTTTGAAGAGATTGACGAACTGTTGTATGAAAGAAAGTGTGAAACTCAGCTTAAAGGACTCCAAGATGAGTGTCAAGAGTGGGCTTTCCGATTCCCTCATCTGCGGATTCTTGGAACGCAGGTGGTATGTCCTACAGATGAAGGATTCCAGTGGTATGCCACGCCAGCTCAGACCCCCAGCCCCTCTAGCAGCTTCCAGAGCAAAGAGAACACTGTCAGCGAGTTGTATGTTCAGGGTCGGAGGGCGGTTTTGTGTCGGCCCACTGTGGAGGTGACCAACACCAGTATTAAAACCAGTGGTAACAATGAAGATGAGCTGCCCAGTGTGATCGAGGCCGAAGGGCTAATAGAAGAGTATCTGGCCTACGACTGCAGAGACATGGATGAAGAATGTGAACGTGAGTATGTGAGCAGACGGAGGAGGCGGAGGCGGTGCCTGCCCCCTGTCTCACCCTATCGATGTCGTCAGGAGGCGGTGCTTGATCTGCTGTTTGACGACGTATGGCGTGAGCTCATTGGCTGGATAGAGGAGCTTGTACGTAAACACTGGGATGGATATGTGTTAGATGATGAGAAGAGTACCGTGGCCCTCAGCCCTAAATGTCCTGATCCTCAGAATCCATTCATGCTGCTGTCCAATGTCTCCACCGTGCTTCCTCCTCTTTCACAGACCAGAACACAACAGCTCACGACAAACTTGCAGGCCCAGACCAGTCGAGTGCCTGTAGGACCGGCGGTTGCTCATCACAATCTTAATGACCTCATCATGATACATGGCATTCCACTGCAGCAAAGGAACCTGGGAACTCTGGACCGATTAAATCAGTCTGACTGTAGGGACTCTGAGGACAAAGTGTCTCATCGTCCTGGCTCTAGTGTGATCCCTGCCGGTAAACCCCGGCCCCGCAGGGCACTGGATCAAAGCACTTCATCTTTGACTCGCCCCCCTCAGTCTGCACGGCGACGGAACCCACCTCCTCGAAATCTGATGCCAATTACGTCCAGCGTAACACAGCCAATCACAACCATGGAGGAGGTGGTCAGAGGCACTAGACTgacAACTCCCAGTGATCGTTTGACTTCACCTCCAATGCATCTCAGTAGAAACACACTCCTTCCTCCCATTGGCACAGGAGACATAGACCATGTATACTCCGGACAACACACACGGCTTATACAGAAGCAGAGAGGATCCTCCAGTCGTGCACACAGTGCAGTGACAGATGAGGGTATCAGTCTGCAGCCCAGAGACAAACTACATCTGCTGGACGTGTTTTCCAGACCCAACACCACACACACCTTTAGGTCAGACACCCCTTATCACCGTTCATTCACTGGGATAGACAACATCGGGCAGGGTCGACCTGGCAGGGCATCTGTTGGCGTAGATTCTCTGGGAATTGGTGTGACTGGAATCAGTTTGGGCATCAGCAGCTCCTCCTTTATAGACTCATTTTCCCATCATCCAATGGGCCATTTCCCAATCGGGCACGAGGAGGAGCCAGATGCAAAAGCCTCAGGTCAAGCACGCTCGCATAACAGAGGTGGTTCAACGGCACGCAGTAGCAGACCAGGGCTTTAACACAAACAcgtaaacacagacacacacacaaaatccccCTTAGCTTCTTGAACCAAACTCACCTCAGCACTGACGCAACTTTTCTTCAGTACTGACAGACACTTTGTAAGTCTGCTGGACTTTTGTATGACGCGCTGTTTGAGCGTGGACCTTATTTATGACcgctgttgttattaatattattattattagtagtagtattgttattcaTGTTGTTGTTTGAAATTTTCTAAAACCCTATTTTTGTATATTGGACTATTCAGCTTCATATGGCTGCCAAATACAGGAAACTGTCTATCCCTTACATCTGCAGATGTACTGTACATGCTGTACTGTATGGAGTAACAACTTTTGGTTTTCTCTTAAGATGGCTCTGTGAGGCCTCCATGGAGTTTCTATGCAGGTTCATAAAAGCAGGGAGTTTAAATAGCCAGAATGTTGCCCGCACCGGAGTGTTCGAGACCCTTTTTGGATCGTGGAACCTGCTATGGAAGATTTATACTGTCTGTATTCTAGACGGATGTTTCATCGTGATGCAATTCCAACCACTTTATATCCACGATCTTGGACCATAGGTGTGTAAGAATTCTTCGTTTTGTATCATGATTCCGTGATCGTGGAATGTTCAATAGCAATTGTAACATCCGAAAGGACTCTAAGGTCTTATTTCCAGCAGTGTAAACCGCAATGAATGGTTTTTCAGAGAAAAACACTGATATTCTGGAAGCATACCCGCAATATGAGGGTGGGCCGATACATTAGTACAGCCTACATAATGACAGGTGAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2102 Human ortholog(s) of this gene implicated in Joubert syndrome. Orthologous to human FAM149B1 (family with sequence similarity 149 member B1).

Ensembl:

ensembl_id ENSDART00000087062

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024909 lncRNA downstream 634689 25953510 ~ 25955190 (-) True XLOC_012142
TCONS_00023929 lncRNA downstream 692095 25893422 ~ 25897784 (-) True XLOC_012141
TCONS_00023924 lncRNA downstream 919351 25669839 ~ 25670528 (-) True XLOC_012136
TCONS_00023923 lncRNA downstream 939012 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023921 lncRNA downstream 940841 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023937 lncRNA upstream 4705 26609651 ~ 26610787 (-) True XLOC_012145
TCONS_00023941 lncRNA upstream 178980 26783926 ~ 26801744 (-) False XLOC_012147
TCONS_00024910 lncRNA upstream 196025 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00024911 lncRNA upstream 345466 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00023948 lncRNA upstream 377089 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00023930 mRNA downstream 51804 26477611 ~ 26538075 (-) False XLOC_012143
TCONS_00023931 mRNA downstream 51951 26480507 ~ 26537928 (-) False XLOC_012143
TCONS_00023932 mRNA downstream 82590 26481573 ~ 26507289 (-) True XLOC_012143
TCONS_00023927 mRNA downstream 728092 25861193 ~ 25861787 (-) True XLOC_012139
TCONS_00023926 mRNA downstream 742328 25821388 ~ 25847551 (-) True XLOC_012138
TCONS_00023935 mRNA upstream 3564 26608510 ~ 26610862 (-) False XLOC_012145
TCONS_00023936 mRNA upstream 3566 26608512 ~ 26610814 (-) False XLOC_012145
TCONS_00023938 mRNA upstream 108165 26713111 ~ 26721007 (-) False XLOC_012146
TCONS_00023939 mRNA upstream 109190 26714136 ~ 26719821 (-) False XLOC_012146
TCONS_00023942 mRNA upstream 245178 26850124 ~ 26867725 (-) False XLOC_012148
TCONS_00023928 other downstream 725460 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023915 other downstream 1001449 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023914 other downstream 1003021 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023912 other downstream 1067128 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023897 other downstream 1652195 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023940 other upstream 111214 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023944 other upstream 262745 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023954 other upstream 598175 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023956 other upstream 609945 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023977 other upstream 1925521 28530467 ~ 28530582 (-) True XLOC_012163

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_04103153_04114542.mRNA True 2653 mRNA 0.51 14 CI01000189 4103153 ~ 4115337 (+)