RNA id: TCONS_00023934


Basic Information

Item Value
RNA id TCONS_00023934
length 2004
RNA type mRNA
GC content 0.52
exon number 16
gene id XLOC_012144
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26589879 ~ 26604946 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATTTCTCGATACAGCCGTCGGCCTGTATCTCACAACCTAGAGATTCGTGGTTTGTCCCGCAGTTGTCTGGACCAGCATCCTCTTCCAGAGGAGGCAGACAATGGTACTGCGCATTCCTCCAGACTCCTGCACAATCTACAGGAGGACATGTCCTTATACAGCAGGTCTGAGGAGTCCTCTGCATCATCCGTCAGATCAGGATGTCAGACACTCACCACAGATGACACTGTTCCGTCTTGGTCTGGTATCCATAGTTACACAGGAACTGGCATCTCGACAGAACGCAGCTCTGTCTTCTCGTGGGGCTACGATGAATTTGATAAAGCCGCTTCCAGGCAGGTCCAGCAGATGTTTGAAGAGATTGACGAACTGTTGTATGAAAGAAAGTGTGAAACTCAGCTTAAAGGACTCCAAGATGAGTGTCAAGAGTGGGCTTTCCGATTCCCTCATCTGCGGATTCTTGGAACGCAGGTGGTATGTCCTACAGATGAAGGATTCCAGTGGTATGCCACGCCAGCTCAGACCCCCAGCCCCTCTAGCAGCTTCCAGAGCAAAGAGAACACTGTCAGCGAGTTGTATGTTCAGGGTCGGAGGGCGGTTTTGTGTCGGCCCACTGTGGAGGTGACCAACACCAGTATTAAAACCAGTGGTAACAATGAAGATGAGCTGCCCAGTGTGATCGAGGCCGAAGGGCTAATAGAAGAGTATCTGGCCTACGACTGCAGAGACATGGATGAAGAATGTGAACGTGAGTATGTGAGCAGACGGAGGAGGCGGAGGCGGTGCCTGCCCCCTGTCTCACCCTATCGATGTCGTCAGGAGGCGGTGCTTGATCTGCTGTTTGACGACGTATGGCGTGAGCTCATTGGCTGGATAGAGGAGCTTGTACGTAAACACTGGGATGGATATGTGTTAGATGATGAGAAGAGTACCGTGGCCCTCAGCCCTAAATGTCCTGATCCTCAGAATCCATTCATGCTGCTGTCCAATGTCTCCACCGTGCTTCCTCCTCTTTCACAGACCAGAACACAACAGCTCACGACAAACTTGCAGGCCCAGAGCTCAAAGTCATGGGGTTCAAAGCACAAGTCAAGACGGAAATCCAAAAAGCAGAGAAAGTCATCGACTACCAGTCGAGTGCCTGTAGGACCGGCGGTTGCTCATCACAATCTTAATGACCTCATCATGATACATGGCATTCCACTGCAGCAAAGGAACCTGGGAACTCTGGACCGATTAAATCAGTCTGACTGTAGGGACTCTGAGGACAAAGTGTCTCATCGTCCTGGCTCTAGTGTGATCCCTGCCGGTAAACCCCGGCCCCGCAGGGCACTGGATCAAAGCACTTCATCTTTGACTCGCCCCCCTCAGTCTGCACGGCGACGGAACCCACCTCCTCGAAATCTGATGCCAATTACGTCCAGCGTAACACAGCCAATCACAACCATGGAGGAGGTGGTCAGAGGCACTAGACTgacAACTCCCAGTGATCGTTTGACTTCACCTCCAATGCATCTCAGTAGAAACACACTCCTTCCTCCCATTGGCACAGGAGACATAGACCATGTATACTCCGGACAACACACACGGCTTATACAGAAGCAGAGAGGATCCTCCAGTCGTGCACACAGTGCAGTGACAGATGAGGGTATCAGTCTGCAGCCCAGAGACAAACTACATCTGCTGGACGTGTTTTCCAGACCCAACACCACACACACCTTTAGGTCAGACACCCCTTATCACCGTTCATTCACTGGGATAGACAACATCGGGCAGGGTCGACCTGGCAGGGCATCTGTTGGCGTAGATTCTCTGGGAATTGGTGTGACTGGAATCAGTTTGGGCATCAGCAGCTCCTCCTTTATAGACTCATTTTCCCATCATCCAATGGGCCATTTCCCAATCGGGCACGAGGAGGAGCCAGATGCAAAAGCCTCAGGTCAAGCACGCTCGCATAACAGAGGTGGTTCAACGGCACGCAGTAGCAGACCAGGGCTTTAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2102 Human ortholog(s) of this gene implicated in Joubert syndrome. Orthologous to human FAM149B1 (family with sequence similarity 149 member B1).

Ensembl:

ensembl_id ENSDART00000174773

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024909 lncRNA downstream 635477 25953510 ~ 25955190 (-) True XLOC_012142
TCONS_00023929 lncRNA downstream 692883 25893422 ~ 25897784 (-) True XLOC_012141
TCONS_00023924 lncRNA downstream 920139 25669839 ~ 25670528 (-) True XLOC_012136
TCONS_00023923 lncRNA downstream 939800 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00023921 lncRNA downstream 941629 25639564 ~ 25649038 (-) True XLOC_012135
TCONS_00023937 lncRNA upstream 5102 26609651 ~ 26610787 (-) True XLOC_012145
TCONS_00023941 lncRNA upstream 179377 26783926 ~ 26801744 (-) False XLOC_012147
TCONS_00024910 lncRNA upstream 196422 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00024911 lncRNA upstream 345863 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00023948 lncRNA upstream 377486 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00023930 mRNA downstream 52592 26477611 ~ 26538075 (-) False XLOC_012143
TCONS_00023931 mRNA downstream 52739 26480507 ~ 26537928 (-) False XLOC_012143
TCONS_00023932 mRNA downstream 83378 26481573 ~ 26507289 (-) True XLOC_012143
TCONS_00023927 mRNA downstream 728880 25861193 ~ 25861787 (-) True XLOC_012139
TCONS_00023926 mRNA downstream 743116 25821388 ~ 25847551 (-) True XLOC_012138
TCONS_00023935 mRNA upstream 3961 26608510 ~ 26610862 (-) False XLOC_012145
TCONS_00023936 mRNA upstream 3963 26608512 ~ 26610814 (-) False XLOC_012145
TCONS_00023938 mRNA upstream 108562 26713111 ~ 26721007 (-) False XLOC_012146
TCONS_00023939 mRNA upstream 109587 26714136 ~ 26719821 (-) False XLOC_012146
TCONS_00023942 mRNA upstream 245575 26850124 ~ 26867725 (-) False XLOC_012148
TCONS_00023928 other downstream 726248 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023915 other downstream 1002237 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023914 other downstream 1003809 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023912 other downstream 1067916 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023897 other downstream 1652983 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023940 other upstream 111611 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023944 other upstream 263142 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023954 other upstream 598572 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023956 other upstream 610342 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023977 other upstream 1925918 28530467 ~ 28530582 (-) True XLOC_012163

Expression Profile

//