RNA id: TCONS_00023941


Basic Information

Item Value
RNA id TCONS_00023941
length 569
lncRNA type antisense
GC content 0.43
exon number 2
gene id XLOC_012147
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 26783926 ~ 26802736 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaatgtaaggCTTTTGAAAAAAGTAAAACGAATATTAAAAGGAAATAAAACTGCATTCGATGGAGGAATGCATCTTCTGTAAACTTTACAGCAAAACGAGCTGGCCATGCGTACTTGATTCTGAATGCTAACTACTAAATGCAGAAGAGACGAAAGAAAAGAAGACGATTATGGAAGTCAACCTAGCGTTTTGTACAACACAAAGACACTTCTGGTTTACTCTTTGCTTTGTGAATGCAACGGACTGACAGTTGGTCTTTGCTTTAACGGTTTTGACTGGCTCACTTCCGAGGTTTTGGGTGTAAAAGGTAAGCCTGCACCAGCATTCAAAAATCTTTCACAGCTCGAGAGTATCGCATTCAAATACTGTATATAGTGTGGTAAGGGCTTCATTTCTTTGGCTGTTGGGCTTCTTTGTTTTTGCTCGTTGCTGCCTCCGCTTTGCGAGCATCTGATGAGtgaAAGTGTTCTTGCGAGGTGCAGCAAGCTGCTCCATTTCCTCATCAAACAGGAAGTCCAGCTCCTCCTGGTCGGCTTCAGGCTGAGGCTTTGGGGTGGACTGAACCAA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0010452 histone H3-K36 methylation biological_process
GO:0044237 cellular metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155491

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023937 lncRNA downstream 173139 26609651 ~ 26610787 (-) True XLOC_012145
TCONS_00024909 lncRNA downstream 828736 25953510 ~ 25955190 (-) True XLOC_012142
TCONS_00023929 lncRNA downstream 886142 25893422 ~ 25897784 (-) True XLOC_012141
TCONS_00023924 lncRNA downstream 1113398 25669839 ~ 25670528 (-) True XLOC_012136
TCONS_00023923 lncRNA downstream 1133059 25650011 ~ 25650867 (-) False XLOC_012136
TCONS_00024911 lncRNA upstream 148668 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00023948 lncRNA upstream 180291 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00024912 lncRNA upstream 600899 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023965 lncRNA upstream 612920 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00023974 lncRNA upstream 1297963 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023938 mRNA downstream 62919 26713111 ~ 26721007 (-) False XLOC_012146
TCONS_00023939 mRNA downstream 64105 26714136 ~ 26719821 (-) False XLOC_012146
TCONS_00023935 mRNA downstream 173064 26608510 ~ 26610862 (-) False XLOC_012145
TCONS_00023936 mRNA downstream 173112 26608512 ~ 26610814 (-) False XLOC_012145
TCONS_00023933 mRNA downstream 178980 26589879 ~ 26604946 (-) False XLOC_012144
TCONS_00023942 mRNA upstream 48380 26850124 ~ 26867725 (-) False XLOC_012148
TCONS_00023943 mRNA upstream 48414 26850158 ~ 26868169 (-) False XLOC_012148
TCONS_00023945 mRNA upstream 77981 26879725 ~ 26926577 (-) False XLOC_012149
TCONS_00023946 mRNA upstream 79470 26881214 ~ 26911852 (-) True XLOC_012149
TCONS_00023947 mRNA upstream 126674 26928418 ~ 26935339 (-) True XLOC_012150
TCONS_00023940 other downstream 62932 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023928 other downstream 919507 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023915 other downstream 1195496 25587625 ~ 25588430 (-) True XLOC_012133
TCONS_00023914 other downstream 1197068 25585487 ~ 25586858 (-) True XLOC_012132
TCONS_00023912 other downstream 1261175 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023944 other upstream 65947 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023954 other upstream 401377 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023956 other upstream 413147 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023977 other upstream 1728723 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023979 other upstream 1822304 28624048 ~ 28624176 (-) True XLOC_012165

Expression Profile

//