RNA id: TCONS_00023967


Basic Information

Item Value
RNA id TCONS_00023967
length 1098
RNA type mRNA
GC content 0.45
exon number 1
gene id XLOC_012160
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 27971144 ~ 27976031 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAAACATGTCGTCTACTAAATGGACCGAAAATACCAACGACACTGAAATCATCGATTCAAGGTTCCGTTACACTCTCTTTCCCATTTTCTATGGTGTGGTCTTCGTCTTGGGGTTGATAGCCAACTGCTATGCTCTCTATGTGCTTCACCGCATGCGGGAGTCTAAAGCCATGAATGAGATTCGGATCTACATGACCAACTTGACTGTCGCAGACCTGTTGTTTGTGTCTGCTCTACCGTTCTGGATTGACTACTACATGCATGAAGGTCACTGGAGATCCACAGAAGCCTTCTGTCGTATCACAGgcacatttttctttattaacaCCTATGGCTCTATTCTATTCCTCACTGTCATCAGCATTAACCGTTACTGGGCTGTTACCAAACCCCTAAAGGCAGCCTCTTCTGACTGCTGGAAACGTGGAGCGATCATCTCAGTGCTCATCTGGGCTTTCATCCTTTCAGCATCGATTCCTCAACTTACTAAAGAGGGAATTCAGAAGGAACAAAGAATGAACAGGTCCATGCAACGCTGTTTTGAGGGTTACCACTACACAGATGAAAATACAAAAAACGTATTGGTCATCACTCACTTCAGCATTATTGGCTTGTTCTTCCTTGTTTTCTTAATGGTGATTATCTGCAACATCTCCATCGCTCGAGCTCTTCTGTCTCAACCCATCAGTCAGCCTCGAGCCAGCACAGGACGACGTCCTGGCGGGACCAAACGAAGAGCTTTGAGGATGTTGTGTGCCGTCATTGGCGTGTTTGTAATCTGTTTCCTACCCCATCATGTGGTGCAAGGTCCCTGGGTTTTGTCAGTGCTGCAACTGAAGAAGTATTGGTCCACATGGACTCACCAAACCTTAAACGATGCCCATCAGATCACCCTCATGCTTATGGGGATCAACTGTCTCCTAGACCCATTGGTGTATTGCTTCGCTACCACAAAATTTCGCAAGTACCTCGAAAATCATTTCACAAAGATGAAGAATAGGAAAAACTGCTCACGTTACACGTTAAGCACAGGTATATCACTGAAGAGTAGACATCAGAGCATTGTCAATGCTGTAGATGAAGAGAAAGCATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004992 platelet activating factor receptor activity molecular_function
GO:0045028 G protein-coupled purinergic nucleotide receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko05150 Staphylococcus aureus infection
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-131127-236 Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within chemotaxis and signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human PTAFR (platelet activating factor receptor).

Ensembl:

ensembl_id ENSDART00000062130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023965 lncRNA downstream 551949 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00024912 lncRNA downstream 567459 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023948 lncRNA downstream 985451 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00024911 lncRNA downstream 1002869 26950412 ~ 26968341 (-) True XLOC_012151
TCONS_00024910 lncRNA downstream 1168474 26800971 ~ 26802736 (-) True XLOC_012147
TCONS_00023974 lncRNA upstream 127400 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023975 lncRNA upstream 127400 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023980 lncRNA upstream 671151 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023986 lncRNA upstream 774326 28746633 ~ 28748380 (-) True XLOC_012168
TCONS_00024913 lncRNA upstream 949265 28921572 ~ 29022478 (-) False XLOC_012172
TCONS_00023964 mRNA downstream 551711 27408889 ~ 27419499 (-) False XLOC_012159
TCONS_00023963 mRNA downstream 551891 27407918 ~ 27419319 (-) False XLOC_012159
TCONS_00023960 mRNA downstream 588342 27335543 ~ 27382868 (-) False XLOC_012157
TCONS_00023968 mRNA upstream 110134 28082441 ~ 28100741 (-) False XLOC_012161
TCONS_00023969 mRNA upstream 112085 28084392 ~ 28101989 (-) False XLOC_012161
TCONS_00023970 mRNA upstream 123019 28095326 ~ 28097760 (-) False XLOC_012161
TCONS_00023971 mRNA upstream 125050 28097357 ~ 28101975 (-) False XLOC_012161
TCONS_00023972 mRNA upstream 125399 28097706 ~ 28100501 (-) False XLOC_012161
TCONS_00023956 other downstream 735744 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 765404 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 1097170 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023940 other downstream 1250216 26716160 ~ 26720994 (-) True XLOC_012146
TCONS_00023928 other downstream 2106791 25864305 ~ 25864419 (-) True XLOC_012140
TCONS_00023977 other upstream 558160 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023979 other upstream 651741 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023990 other upstream 837397 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 1244060 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 1300656 29272963 ~ 29273081 (-) True XLOC_012179

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_01256704_01259709.mRNA True 1371 mRNA 0.46 2 CI01000189 1256656 ~ 1259895 (-)