Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00023976 |
| length | 2633 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 2 |
| gene id | XLOC_012162 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 28166859 ~ 28198099 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007187 | G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger | biological_process |
| GO:0007198 | adenylate cyclase-inhibiting serotonin receptor signaling pathway | biological_process |
| GO:0006939 | smooth muscle contraction | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0040012 | regulation of locomotion | biological_process |
| GO:0042310 | vasoconstriction | biological_process |
| GO:0050795 | regulation of behavior | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0030425 | dendrite | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0030594 | neurotransmitter receptor activity | molecular_function |
| GO:0004993 | G protein-coupled serotonin receptor activity | molecular_function |
| GO:0051378 | serotonin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090409-3 | Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; smooth muscle contraction; and vasoconstriction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain. Orthologous to human HTR1D (5-hydroxytryptamine receptor 1D). |
| ensembl_id | ENSDART00000156143 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00023975 | lncRNA | downstream | 64884 | 28099707 ~ 28101975 (-) | True | XLOC_012161 |
| TCONS_00023974 | lncRNA | downstream | 64887 | 28099707 ~ 28101972 (-) | False | XLOC_012161 |
| TCONS_00023965 | lncRNA | downstream | 747598 | 27414664 ~ 27419261 (-) | True | XLOC_012159 |
| TCONS_00024912 | lncRNA | downstream | 763108 | 27402643 ~ 27403751 (-) | True | XLOC_012158 |
| TCONS_00023948 | lncRNA | downstream | 1181100 | 26982035 ~ 26985759 (-) | True | XLOC_012152 |
| TCONS_00023980 | lncRNA | upstream | 445359 | 28643458 ~ 28652512 (-) | True | XLOC_012166 |
| TCONS_00023986 | lncRNA | upstream | 548534 | 28746633 ~ 28748380 (-) | True | XLOC_012168 |
| TCONS_00024913 | lncRNA | upstream | 723473 | 28921572 ~ 29022478 (-) | False | XLOC_012172 |
| TCONS_00024914 | lncRNA | upstream | 723473 | 28921572 ~ 29022679 (-) | False | XLOC_012172 |
| TCONS_00024915 | lncRNA | upstream | 746482 | 28944581 ~ 28954033 (-) | False | XLOC_012172 |
| TCONS_00023969 | mRNA | downstream | 64870 | 28084392 ~ 28101989 (-) | False | XLOC_012161 |
| TCONS_00023971 | mRNA | downstream | 64884 | 28097357 ~ 28101975 (-) | False | XLOC_012161 |
| TCONS_00023973 | mRNA | downstream | 64979 | 28099363 ~ 28101880 (-) | False | XLOC_012161 |
| TCONS_00023968 | mRNA | downstream | 66118 | 28082441 ~ 28100741 (-) | False | XLOC_012161 |
| TCONS_00023972 | mRNA | downstream | 66358 | 28097706 ~ 28100501 (-) | False | XLOC_012161 |
| TCONS_00023978 | mRNA | upstream | 409318 | 28607417 ~ 28612851 (-) | True | XLOC_012164 |
| TCONS_00023981 | mRNA | upstream | 505872 | 28703971 ~ 28707898 (-) | False | XLOC_012167 |
| TCONS_00023982 | mRNA | upstream | 506100 | 28704199 ~ 28707970 (-) | False | XLOC_012167 |
| TCONS_00023984 | mRNA | upstream | 506172 | 28704271 ~ 28705264 (-) | False | XLOC_012167 |
| TCONS_00023983 | mRNA | upstream | 506172 | 28704271 ~ 28705264 (-) | True | XLOC_012167 |
| TCONS_00023956 | other | downstream | 931393 | 27214891 ~ 27235466 (-) | True | XLOC_012154 |
| TCONS_00023954 | other | downstream | 961053 | 27203121 ~ 27205806 (-) | False | XLOC_012154 |
| TCONS_00023944 | other | downstream | 1292819 | 26867691 ~ 26874040 (-) | True | XLOC_012148 |
| TCONS_00023940 | other | downstream | 1445865 | 26716160 ~ 26720994 (-) | True | XLOC_012146 |
| TCONS_00023928 | other | downstream | 2302440 | 25864305 ~ 25864419 (-) | True | XLOC_012140 |
| TCONS_00023977 | other | upstream | 332368 | 28530467 ~ 28530582 (-) | True | XLOC_012163 |
| TCONS_00023979 | other | upstream | 425949 | 28624048 ~ 28624176 (-) | True | XLOC_012165 |
| TCONS_00023990 | other | upstream | 611605 | 28809704 ~ 28811638 (-) | True | XLOC_012171 |
| TCONS_00023997 | other | upstream | 1018268 | 29216367 ~ 29224911 (-) | True | XLOC_012176 |
| TCONS_00024000 | other | upstream | 1074864 | 29272963 ~ 29273081 (-) | True | XLOC_012179 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000189_01391124_01392266.mRNA | True | 3303 | mRNA | 0.43 | 1 | CI01000189 | 1390642 ~ 1393944 (-) |
