RNA id: TCONS_00023980


Basic Information

Item Value
RNA id TCONS_00023980
length 522
lncRNA type antisense
GC content 0.48
exon number 2
gene id XLOC_012166
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28643458 ~ 28652512 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGTAAAATAAGCTGAGATAAGTGATGTGCTGTGCTGTGCAGTGTGGGTGATGCTGACTCACCCAGCTGTGTGTTGTCTCTGCGGGGAAGCTCTTTAACCAGAGCCACTGCGTGTTCCGATACCTCCACTGCCTCTCTCTGAGCCAGCTGTCTTAAACAGGCCACAACCGCTCGCCGCAGAGACAGATCCGGCCCCACAGAGGTGATGAGGGCGTTAAGACAGCGGCCCAGGCTTTGCTGCacctccatgtgtgtgtgtggggtagAGAGGAGCAAACGCAGCACCAGAGTGAAGCTGGCCTCCAGGTGACTGTGGTACAAAGGACCTGCTAGGTCCACCACAGTGGACAGAGCATGAAGAGCCCACATCTGCACACAAAGTTCACTGAAagattaatgcattaaaaaaaaaaaaaaaaactgcaatctgCGTCAAAACATTCTCTGTTCATTCTAGATTCAAGCATAAGTTGCTCGTTCACACTGAAATGtcagaaaataataaaacttagttaatatac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000137698

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023975 lncRNA downstream 541483 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023974 lncRNA downstream 541486 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023965 lncRNA downstream 1224197 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00024912 lncRNA downstream 1239707 27402643 ~ 27403751 (-) True XLOC_012158
TCONS_00023948 lncRNA downstream 1657699 26982035 ~ 26985759 (-) True XLOC_012152
TCONS_00023986 lncRNA upstream 94121 28746633 ~ 28748380 (-) True XLOC_012168
TCONS_00024913 lncRNA upstream 269060 28921572 ~ 29022478 (-) False XLOC_012172
TCONS_00024914 lncRNA upstream 269060 28921572 ~ 29022679 (-) False XLOC_012172
TCONS_00024915 lncRNA upstream 292069 28944581 ~ 28954033 (-) False XLOC_012172
TCONS_00024916 lncRNA upstream 292069 28944581 ~ 29022499 (-) False XLOC_012172
TCONS_00023978 mRNA downstream 30607 28607417 ~ 28612851 (-) True XLOC_012164
TCONS_00023976 mRNA downstream 445359 28166859 ~ 28198099 (-) True XLOC_012162
TCONS_00023969 mRNA downstream 541469 28084392 ~ 28101989 (-) False XLOC_012161
TCONS_00023971 mRNA downstream 541483 28097357 ~ 28101975 (-) False XLOC_012161
TCONS_00023973 mRNA downstream 541578 28099363 ~ 28101880 (-) False XLOC_012161
TCONS_00023981 mRNA upstream 51459 28703971 ~ 28707898 (-) False XLOC_012167
TCONS_00023982 mRNA upstream 51687 28704199 ~ 28707970 (-) False XLOC_012167
TCONS_00023984 mRNA upstream 51759 28704271 ~ 28705264 (-) False XLOC_012167
TCONS_00023983 mRNA upstream 51759 28704271 ~ 28705264 (-) True XLOC_012167
TCONS_00023985 mRNA upstream 91149 28743661 ~ 28749640 (-) False XLOC_012168
TCONS_00023979 other downstream 19282 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023977 other downstream 112876 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023956 other downstream 1407992 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 1437652 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 1769418 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023990 other upstream 157192 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 563855 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 620451 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00024004 other upstream 984693 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024011 other upstream 1523924 30176436 ~ 30204529 (-) False XLOC_012187

Expression Profile

//