RNA id: TCONS_00023987


Basic Information

Item Value
RNA id TCONS_00023987
length 2699
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_012169
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28760586 ~ 28770800 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGTAAAGGCCATTTGGTGTAGTCTGCTGGTTGTTCTTGGCTTCCACCAAAGAAGAGAGCAATACTGTTAACCCCATCAAACATCATCCTGAGATGACTCCAACCTAAAGGTTTTCATTAAGATGGACATTCACAGCATTCCTCCCACAAACATCACAGTCTACCGTGTGTCGGATGGAGGAGAAACAGCTATCGGCGTCTATTTGGTGATACTAGGATGGCTCTCATGGATTGGAAATGGGACTGTAATATTgcttttaacaaagcaaagaaaggcACTCGAACCACAGGATTTCTTGACTCTCAACCTTGCCATTTCTGATGCCAGCATATCTATTTTTGGATATTCTCGAGGGATCCTTGAAGTTTTTGATGTGTTCAGAGATGAAGGCTATCTTATAAAGACATTTTGGACTTGCAAGGTGGACGGATTCCTAATCCTGCTCTTCGGACTCATCAGCATCAACACACTGACAGCCATCAGTGTCATCCGCTACATCAAAGGCTGCCACCCTCATCATGCTCATCACATCAACAAGCGTAATATCTGCTTGGTCATAACTGCAGTCTGGCTGTTCTGTCTGTTCTGGGCGGGAGCTCCACTGCTCGGCTGGGGTAGTTACAGAGCACGTGGGTACGGGACATGTGAAATCGACTGGACAAGAGCTCTGTATTCCATTCCATTTAAGCTCTACGTCATTGGCATTTTCTTTTTCAACTTCTTCGTGCCACTGTTCATTATAGTGTTTGCATACGTGTCCATAATCCGCACCGTTAACTCCAGCCACAAATCCAGCCAGGGAGGAGATGTCAGCGAGAGACAGAAGAAGATAGAGCGCAGCATTACACGGGTCTCCCTCATTCTGTGTGCGGCCTTCCTGTTGGCCTGGTCCCCATATGCAGTCATTTCCATGTGGTCCGCCTTGGGTTACCAAATACCCACACTCAACGGCATCCTGGCAAGCTTGTTTGCCAAGTCAGCAAGTTTTTACAATCCGTTTATCTACATTGGCATGAGCTCTAAGTTCCGGAAGGACCTGCAGGCTTTGTTTTACTGCCTCAGACCAACATCAGCACACAGACCCACCCCTCCTGCACCGCTGGCCCAGCCTGCTGATGTGCAGCTCAATGTGGAGGATGAACCAGTAGAGATGGACCATAATCTGAGTGAACACATCCATGAGGAGAAGGCTGAGACCCCTTCTGAAGTGGAGTGCCAAAATAGCCCATTAATCGAGCCCCACAACATCAGCCCTCATGGATTAATGAGGAAACCAAGCAACTCTGGAAGACTTTAGCTGCCTTTATTATATTAGTTAATGTCCTCTGTTTATATAAAGCCAATGGTAATAATACAGAACATGCACTTAATTTCATTTCAAATAGCAACACACTTGGACAGTCCGTGCTCCCAGTAATACTTCATGTTAATCACAATGTTTTATGAGAGTTCAAATAAATCTTCATAAGGCCGTAATCATTAATGAGATTATAATAAGCACCAGCAGCTGGAATGGTGGTGAAGACCTTTAAGATGGGTTGGAAGGATTAACAAAGGTGGATTTCTAAATTGAGTTTGGTGACTGCAGAGTTAAAACCTTGTGTCTCGCCACAAGTGTCCTCAAACGAGTGTTTGACCAGACTGTAATGTCAGGACAGAGTACAAATTACTCAAGCGAGGAACGAACAGAACAGTCAGGTAATGGTGCCGTGTTTACTTTATCCAGACACATAATTCAAAAGCAGCAGGCATGCTCGTAGTCAGAGGAACAGTGAAAGTTTGAGTCCAAACAGAGCAGCAGGAACAGTCAAACAACCCAGAGCCATAATTCCATGAAGAAACAAGGTCAATGATTTCAGAACAAATAGATTAACACCAAACAACTCAACTCGAAAATGAATACACAGATAAGCAAAAACAAAATCACTTGAAAAGCATCAGTTTATAAGTGAAATGCAATacttttttgttcaaatgttttgTACAGTACACATGGATTTACACTGATTATTTCTGTCAGTGTCTGCAATTGACAATCTATTTAGATGTTTGAAAGGTTCGCACAGCATCTTATGATAACTTGAATATTGTCAATGAATTTGCATTTTAAGTCATTTTCTATTTGTGATTAAAATTTGTAATTGACAAAGTCAGAAAACTAATTTGACGCAACAAACGTTAAATTGATTTCATCTGTCAGATCCATATTAATCAGCACTAGCGTTTGTGCTTTACTCAGTGTGTGGAACTTCTAAGTTTCACGCGCAGATCAAAAACTGGCAGGAGTTTCTCTGGTGGAGGACAGTGAGTGACTCAATATAAACTTTAAGACTGCGCGAAGATCAAATTTGCCTCTCTGTAAGTTCCTGGACCACACAGTAACATGCTAGTAAACGCGTTTGGGAATCGTGGTGCAGTTTTCTctcaaaataaactgtaaatatagATGGACACCCCGCCCAATTTGCGTTGCTGCAGTGCGTCGTCAAAAGTGTCTTGGCAAGGCTTCGATTGCAGTGGTGGTTTGTGATCTGCGTGGAGCATAGAAAAGCCCTGACTTCAGTAACTTCAAATCTTGAAAGTCAGATAATGGATTTAAACTGTTTTCCTTTTGGTTTACTATTTCTAATTTGAATGTAACATAAATGcaatgtataaatgtaatataaattaaataaagtcttTTTACAATGAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-402 Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; gill; integument; and testis.

Ensembl:

ensembl_id ENSDART00000156485

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023986 lncRNA downstream 12206 28746633 ~ 28748380 (-) True XLOC_012168
TCONS_00023980 lncRNA downstream 108074 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023975 lncRNA downstream 658611 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023974 lncRNA downstream 658614 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023965 lncRNA downstream 1341325 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00024913 lncRNA upstream 150772 28921572 ~ 29022478 (-) False XLOC_012172
TCONS_00024914 lncRNA upstream 150772 28921572 ~ 29022679 (-) False XLOC_012172
TCONS_00024915 lncRNA upstream 173781 28944581 ~ 28954033 (-) False XLOC_012172
TCONS_00024916 lncRNA upstream 173781 28944581 ~ 29022499 (-) False XLOC_012172
TCONS_00023991 lncRNA upstream 173781 28944581 ~ 29022501 (-) False XLOC_012172
TCONS_00023985 mRNA downstream 10946 28743661 ~ 28749640 (-) False XLOC_012168
TCONS_00023982 mRNA downstream 52616 28704199 ~ 28707970 (-) False XLOC_012167
TCONS_00023981 mRNA downstream 52688 28703971 ~ 28707898 (-) False XLOC_012167
TCONS_00023984 mRNA downstream 55322 28704271 ~ 28705264 (-) False XLOC_012167
TCONS_00023983 mRNA downstream 55322 28704271 ~ 28705264 (-) True XLOC_012167
TCONS_00023988 mRNA upstream 228 28771028 ~ 28797395 (-) True XLOC_012170
TCONS_00023989 mRNA upstream 27925 28798725 ~ 28811747 (-) False XLOC_012171
TCONS_00023992 mRNA upstream 346227 29117027 ~ 29119362 (-) True XLOC_012173
TCONS_00023993 mRNA upstream 353390 29124190 ~ 29194219 (-) False XLOC_012174
TCONS_00023994 mRNA upstream 353688 29124488 ~ 29192987 (-) True XLOC_012174
TCONS_00023979 other downstream 136410 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023977 other downstream 230004 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023956 other downstream 1525120 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 1554780 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 1886546 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023990 other upstream 38904 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023997 other upstream 445567 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 502163 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00024004 other upstream 866405 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024011 other upstream 1405636 30176436 ~ 30204529 (-) False XLOC_012187

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_01810663_01815039.mRNA True 1089 mRNA 0.50 8 CI01000189 1810663 ~ 1815039 (-)
bowfin (Amia calva) AMCG00000658 True 1224 mRNA 0.62 6 CM030141.1 21509374 ~ 21514322 (+)