RNA id: TCONS_00023989


Basic Information

Item Value
RNA id TCONS_00023989
length 3360
RNA type mRNA
GC content 0.42
exon number 14
gene id XLOC_012171
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 28798725 ~ 28811747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCCGCAGCTCAAATGTTTTGGCCAGAGCTCCTCCCTCCGGAAAATCTGTGTTTGGGTTTGAATTGAACCAATCAAATGCGCGCGGAGGAGGATTTTCACGAGCAGAGCGAAGTTTGAATTTGTGTAATGCGATTTACACTTTTACGCGCACGAATGTCtctaaagtaatattaaaaacTCGACTTTTCCTGGAGAATATGTATATTTCTATCTGATGGAAGAAGAAGACTGACTTTAAGATAAAGCTCGCGAAAAAGTGAGTCTGAAGCCGTGTAGGTTAACGTTAGCCATGTACTGCTAGCCTTTAACTTGGGGCTCTTTAAATCGCCATTTTAAAATTTAACTTTACATTTGACTTCCCCACCTAAAAATGAAAGCGTTAAATGAAAAGTCCGCTGAAATAAAGCTGCAGGACAGAGATCTCATTTGCTGTCTATGTAAGAGATCTGAGAATAATAAAGAGAAGTATGGAGAAAAGGTTCACCTTGAGCAGCACAACCTGGCTGTCCACTTTTTTTGTCTGCTGATGTCTAGTGGAATATGCCAGAGAGGAGAGGAAGATGAAGACGTGTATGGTTTTCTTGTGGGTGACATTAAAAAGGAGATCCGCAGATCATCGAGGCTGAGATGCTTTCATTGCAAAAAGGCTGGTGCTTCAGTGGGCTGCTCCATCAAAAGCTGTCGGCAAATGGTCCACATGCCCTGTGGATTAGAGCAGGAGTTTGTTTTCCAGTTCACAGGCTTGTTTCCGTCTTTCTGTAAAAAGCATGCGCCTACTCAGTCCTGTGACTCCAGCCACAGTCTGCCCCACTCCTGCTCCATCTGTCTAGATCCCATTGAACCCATCCTCTCCTATCATGTCCTCAAATGCCCTGCATGTCATGGAAGCTGGTTTCACAGGAAATGTGTACAGAATTATGCACACAGCGCGGCAATGTTTTTCTTTAAATGCACACTCTGCAATAACAAGGAGCAGTTTCAGCAGGAAATGCTCCGAATGGGAATATATATACCAGAGCGTGATGCATCTTGGGAACTGGAGGAGAATGCATTTGTAGAGTTATTGCAGGTCTACCACCGCTGTGATGCAGTGAAGTGTCTGTGTCACAAAGGTCGTGAACACAGCTCACAGTCAGGGTATTTTGAAATAGTTCTCTGCAAGTTGTGTGGATCCAGGGGAACTCATCGAAAGTGCTCTAATATTCGAGTTTATGAAGCTGACTGGATGTGTGCTGACTGTAAAACTGCAGCTGAGGGCAAAACATCATTGCCATTGCCAAATCATGTTGAATCGCCACTGGCTATAAGACAAGAGAGGAAGAGGCTGTTTAAATCGATCTCTGACATTCACTCTTCAATCGTCGCTAAAAGGCAGTGTGTGCCAGCCACTTCTCCGGAGGTCTTAATGGATCTGGCCTGTCAGATCTCACAGCAGCAGTTCACAGAGGTGCTGGTGGGAGATGATGATGGTGGCGTGATGGAAGCAGCTCTGCAGGTGCTGCGCCAAAGTGACTTTAATCCCTGCTGCACACTTTCTGTCAAATTCTCCAAGGACAAACTGAACAACAACATTAGAAACCAGCGTCGCTTCCTCAGGCGTCTCGTTTCAAAACTGCAGGTCTCAGACATTTTTGAGGGATCCGATGGAGCTAAAAACCTGGCTCTGAACTCAAAAGCTCTGAGGGACGATCTCTACTTTGATGTCGGCAGTCTATTGGCCCTCTCTTTGGTTCACGGAGGTCCTCCTCTGGGCTTCTTCTCTCCTGCACTGTATCATAGTCTGTTCAACTATCCCAAAAACTACAGGCCTACTTTAGAAGACCTCGGAGACACTGCTTTTGGGCACAAAATCAGACAAATCGCAGAAGCAAAGTCAATGAAGGAGCTGAGACATGCGATGAAGTCAGCATCACAATATTTGGAAGCTGCAGGCTGTTGGCGGAAGATCAGCAAACTCTCTGAGAAAGACATGTTGGTGGAGGATGTACTGAATTTCTACCTGATCATCAGACTGCAGCTTCCTCTGCAAAGATTCCGTGAAGGTTTGAGGACACTAGGAATGTTCGAGCAGGTCCAGATGTGCTCAGAGACGTTCTTTCCAGTCTTCTGtggacctgtggaaaggctgaCGGCTGAATCTGTCATGGAGCTCTTCACAACCCGGTTatcagaagaaaaagaaaaacaagttcTAGAAAAGACCACGATAAGCTTTTGGAAACAGTATCTGCATGAATGTGAAGAGGGTCAATGTGCAGCATCGCTGGAGGACCTCCTAACATTTGCCACTGGTACAGATTTGGTTCCAGCCATCGGATTCAAGCCCACTCCGTCCATCTCATTCCTCAGCTCACCAGACAACTTGTGTGCTTTTCCTCAGAGCAACTGTGATGCCAATCATCTCATTCTGCCTACTCTACCCTCTTACCAGCTCTTCAAGAAACATTTGGATTACACAGTGTGTCAGTTCTCAGTTATGCAGGACATTTAAAGCCGAGCTGGATGTTTCAGTAGAGTCATGGTGTAGATTCACATAATGATTTACAATGGTGCTAAAAGTCTTTTTGTTTGCAGTTAGCGAGTATTATATCAACAGTCTTAAATCGCATTAATGTAAATGATTCACTCTATTTATCAGTAGTTAAACGCAGGTTTTAGAACTTGATGAACTCTGTGTTGTTTAAATGGTCTCAGTTATTGATCCAATTTAATTCTCAAAACAATTTGAGCCACTCAACTATTGAAGAAAAACTCTGAggtaatattttctacagaagcTTAGACTCAtggaaaatttgtttttaaaaaaaagattatatgtGTGCTTTTCTTATCAATTTAGACTTGAAGAGATTGGTAAAGCTGGTCATGagcatgtaaatgtaaatagctTAATGTAAATGTTGCTTTGAATGGCTTAGATGTTGATTTTATTAGCTTAGAAGTGCAGAGGTTTTTAAACCAAAGCCCAAAGTAGTTGAGTAGTAATGAGTTGTTatgttctttgtttaattttgatttttcttataaaaaaaaaaaaactgcaaagctTAAATTGACGCGCTTATAATTTTCTGGTAGCCACAAGATGGAGCAATTGCAAGATTTTTGCCACACTGCTAATGGCAAAATGCCGTCACTACAAATGAAGTAGTTACTGAATGAATTGGTCTGCTTTGCTTGTCATTTACATTAGAATCACATTTAAGCAGGTATGTCTTTGTTCTTGTACAGTTTTATTTCTCCTGATGTCGTTTGTTTGATATCTTGACAACTCGATAACTGctataacttatttgttttaactTTCTTTTACTGTGTTTACTTTCATTAAATAATGAATGGATTTATAATGTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-400 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be active in nucleus. Is expressed in central nervous system; head; pectoral fin musculature; and proliferative region. Orthologous to human G2E3 (G2/M-phase specific E3 ubiquitin protein ligase).

Ensembl:

ensembl_id ENSDART00000001444

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023986 lncRNA downstream 50345 28746633 ~ 28748380 (-) True XLOC_012168
TCONS_00023980 lncRNA downstream 146213 28643458 ~ 28652512 (-) True XLOC_012166
TCONS_00023975 lncRNA downstream 696750 28099707 ~ 28101975 (-) True XLOC_012161
TCONS_00023974 lncRNA downstream 696753 28099707 ~ 28101972 (-) False XLOC_012161
TCONS_00023965 lncRNA downstream 1379464 27414664 ~ 27419261 (-) True XLOC_012159
TCONS_00024913 lncRNA upstream 109825 28921572 ~ 29022478 (-) False XLOC_012172
TCONS_00024914 lncRNA upstream 109825 28921572 ~ 29022679 (-) False XLOC_012172
TCONS_00024915 lncRNA upstream 132834 28944581 ~ 28954033 (-) False XLOC_012172
TCONS_00024916 lncRNA upstream 132834 28944581 ~ 29022499 (-) False XLOC_012172
TCONS_00023991 lncRNA upstream 132834 28944581 ~ 29022501 (-) False XLOC_012172
TCONS_00023988 mRNA downstream 1330 28771028 ~ 28797395 (-) True XLOC_012170
TCONS_00023987 mRNA downstream 27925 28760586 ~ 28770800 (-) True XLOC_012169
TCONS_00023985 mRNA downstream 49085 28743661 ~ 28749640 (-) False XLOC_012168
TCONS_00023982 mRNA downstream 90755 28704199 ~ 28707970 (-) False XLOC_012167
TCONS_00023992 mRNA upstream 305280 29117027 ~ 29119362 (-) True XLOC_012173
TCONS_00023993 mRNA upstream 312443 29124190 ~ 29194219 (-) False XLOC_012174
TCONS_00023994 mRNA upstream 312741 29124488 ~ 29192987 (-) True XLOC_012174
TCONS_00023995 mRNA upstream 384215 29195962 ~ 29213710 (-) True XLOC_012175
TCONS_00023996 mRNA upstream 404620 29216367 ~ 29224908 (-) False XLOC_012176
TCONS_00023979 other downstream 174549 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023977 other downstream 268143 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023956 other downstream 1563259 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 1592919 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00023944 other downstream 1924685 26867691 ~ 26874040 (-) True XLOC_012148
TCONS_00023997 other upstream 404620 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00024000 other upstream 461216 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00024004 other upstream 825458 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024011 other upstream 1364689 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024018 other upstream 1809673 30621420 ~ 30635295 (-) True XLOC_012194

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_01832010_01841129.mRNA True 4119 mRNA 0.41 14 CI01000189 1831176 ~ 1842290 (-)