RNA id: TCONS_00023996


Basic Information

Item Value
RNA id TCONS_00023996
length 757
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_012176
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 29216066 ~ 29224911 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGGTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCACAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatgaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACCTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGGGCAATCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCGCCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTACACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGGTGTGGTTATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGGAAAATTAATTAGCTGTAGGAACTTGTTTTAaatggtgtgcgtgtgtgtgtgtgagagagagagagagagcatgtg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006364 rRNA processing biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000156288

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024914 lncRNA downstream 193688 28921572 ~ 29022679 (-) False XLOC_012172
TCONS_00024005 lncRNA upstream 497177 29722085 ~ 29723213 (-) True XLOC_012183
TCONS_00024009 lncRNA upstream 751101 29976009 ~ 30054157 (-) True XLOC_012185
TCONS_00024919 lncRNA upstream 852423 30077331 ~ 30082713 (-) True XLOC_012186
TCONS_00024920 lncRNA upstream 926859 30151767 ~ 30225524 (-) False XLOC_012187
TCONS_00024921 lncRNA upstream 978716 30203624 ~ 30225524 (-) True XLOC_012187
TCONS_00023995 mRNA downstream 2657 29195962 ~ 29213710 (-) True XLOC_012175
TCONS_00023993 mRNA downstream 22148 29124190 ~ 29194219 (-) False XLOC_012174
TCONS_00023994 mRNA downstream 23380 29124488 ~ 29192987 (-) True XLOC_012174
TCONS_00023992 mRNA downstream 97005 29117027 ~ 29119362 (-) True XLOC_012173
TCONS_00023989 mRNA downstream 404620 28798725 ~ 28811747 (-) False XLOC_012171
TCONS_00023998 mRNA upstream 2594 29227502 ~ 29249258 (-) True XLOC_012177
TCONS_00023999 mRNA upstream 26754 29251662 ~ 29271359 (-) True XLOC_012178
TCONS_00024001 mRNA upstream 57955 29282863 ~ 29312506 (-) False XLOC_012180
TCONS_00024002 mRNA upstream 58722 29283630 ~ 29311835 (-) True XLOC_012180
TCONS_00024003 mRNA upstream 151946 29376854 ~ 29771639 (-) False XLOC_012181
TCONS_00023990 other downstream 404729 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00023979 other downstream 592191 28624048 ~ 28624176 (-) True XLOC_012165
TCONS_00023977 other downstream 685785 28530467 ~ 28530582 (-) True XLOC_012163
TCONS_00023956 other downstream 1980901 27214891 ~ 27235466 (-) True XLOC_012154
TCONS_00023954 other downstream 2010561 27203121 ~ 27205806 (-) False XLOC_012154
TCONS_00024000 other upstream 48055 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00024004 other upstream 412297 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024011 other upstream 951528 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024018 other upstream 1396512 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024025 other upstream 1675864 30900772 ~ 30901872 (-) False XLOC_012199

Expression Profile

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