RNA id: TCONS_00024066


Basic Information

Item Value
RNA id TCONS_00024066
length 1681
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_012214
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31667625 ~ 31695257 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCAAGACCTCCAGTGATTGGCTGCTTAGAATCACGTGTGTTGTTGTCAAGATGGCGTCTCCGAATGGAGGTGAGGACTTTGAATCTTCTCTGATAAGTTTAGAAAATCTTGACCGGGCTTCACCTGACCTGTGGCCAGAGCAGTTGCCGGGTGTGTCAGAATTTGCAGCATCctttaaaaatCCTATTACAAATTCTCCACCCAAATGGATGGCTGAACTGGAGTCAGAGGATATTGAAATGTTGAAAGaattaggAAGTTTGACCACAGCAAATCTGATGGAAAAGGTGAAGGGTCTGCAGAATCTGGCTTACCAGTTGGGCTTGGAGGAGTcTCGAGAAATGACGAGAGGGAAATTCCTCAACATCTTGGAGAGGCCCAAAAAGTGAAGAGACAGATGGTGATTGTTGACCTGTGGGGTCAGCTATTAGCTGATTGTGAAACTGTAAGGCAGAATGATGATTTGTGTGCTTTCTAACGCTTTCACGAAGACTTGACTGATTTGGGGTCAAAACGTCATAACAGTTCAGCAtttttgtatatatgtttgtaaaatgtttggCTTCTTTTAATAGCAGCTGCTGAGTAGTATGGGTTAGATGGCGGTGTGCTTTTCAATAcgtgtatttatttttcattcttcaGTGTTTAATACAACTTcagttgttttaataaaaaaaaatttaatgttgtTTAACGGTAGTACAGCTCGTGtcaacgtttttttttctttttacttttggCATCAGCTAGTGCTGCTTTGCTTTCCAATGGCCAGCCAATGACATTTGCTGAAAGTAGCTTCTGTCAAACAATGAGGGAGTTCATGAAGAAGCGTTCAAACTTTTAATTAGGGCAATAACTTCATGCCTGTGCCACTCCATCGACTGCTCCATTAACGTCTCTGTTTTGCTCGGGAAATGTAAAAGGCTTTGACATGAGAGTGCTTCCAAACCAGTGCAAGgccatttttttctatttaatggGAATTGGAAGTTTTGAAGGCCCCCAGCACAAAACATTGCGTAAAAATAATATTGCTCATTGTTATCCCTGTTAACAAGAGTTGACATAATTACTAGGGCCATTTCTTCTCTAATTAGCACACTTCCAGGGACATTGGCGCGAACGGTCCCGGAGAAAAGGGAATCAGACAGGCATGCTGAACGGCAAACAAAGAACACTCCGGCGAGTGTAATTAGGTGAGACAGTGGCCAGGACTGTTCTCGGCTGGAGATGTCGTAGGGGCTTCGGCTGCGGTTGGTGAGTGTTCGCTCCTGCTCCCACCAATTCTTAGAGGTACGCCTCTCTCCCCCCTACCAGTGCCTAATAAGCCCCTAATTGTCTTTCTGATTCACATGGAACAAGCAAGCTGCTGATTTGAACCTTGCAAAGCTACTGCTGGTGTCTGTTCCTGCTTTGGAGGACCCAGAATTGCCCCTTTATAAACAAGCTTTTGTTGACAGTTTAAAGTGCAGTGAACTTGCAAATTCCCTGGCAAACAACCTCTTATTTTGACAAACAGTCTAATGTGCTTGGTGAATGAAGGTATATTCTTCTTTTGTTTGACCTATTGTTGAATTGTTTACTAAAGGTCTTGATATACTTAAAGCAAAGTCGAAAATGGAATCGTTCGGTTTAGACCAAATAAAGTTTGTTTGGAACTTGTATTAAAAAAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0070176 DRM complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04218 Cellular senescence

ZFIN:

id description
ZDB-GENE-061110-82 Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of DRM complex. Orthologous to human LIN52 (lin-52 DREAM MuvB core complex component).

Ensembl:

ensembl_id ENSDART00000143090

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024063 lncRNA downstream 56012 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024933 lncRNA downstream 307026 31349711 ~ 31360599 (-) False XLOC_012207
TCONS_00024054 lncRNA downstream 315378 31349711 ~ 31352247 (-) False XLOC_012207
TCONS_00024050 lncRNA downstream 446089 31218882 ~ 31221536 (-) True XLOC_012205
TCONS_00024042 lncRNA downstream 482382 31182644 ~ 31185243 (-) True XLOC_012203
TCONS_00024070 lncRNA upstream 7084 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024934 lncRNA upstream 432640 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024935 lncRNA upstream 432640 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024075 lncRNA upstream 671849 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024079 lncRNA upstream 695799 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024065 mRNA downstream 7955 31652640 ~ 31659670 (-) True XLOC_012213
TCONS_00024064 mRNA downstream 27780 31623356 ~ 31639845 (-) True XLOC_012212
TCONS_00024062 mRNA downstream 55933 31606635 ~ 31611692 (-) False XLOC_012211
TCONS_00024060 mRNA downstream 87892 31535764 ~ 31579733 (-) False XLOC_012210
TCONS_00024061 mRNA downstream 87910 31535806 ~ 31579715 (-) True XLOC_012210
TCONS_00024068 mRNA upstream 1400 31696657 ~ 31712041 (-) False XLOC_012215
TCONS_00024069 mRNA upstream 1788 31697045 ~ 31712016 (-) False XLOC_012215
TCONS_00024071 mRNA upstream 21935 31717192 ~ 31719071 (-) True XLOC_012216
TCONS_00024072 mRNA upstream 110518 31805775 ~ 31819837 (-) True XLOC_012217
TCONS_00024074 mRNA upstream 670684 32365941 ~ 32370047 (-) False XLOC_012220
TCONS_00024057 other downstream 283077 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 307026 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 756003 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 765753 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 1032330 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024073 other upstream 550872 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 695799 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 728177 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024092 other upstream 1051135 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 1054918 32750175 ~ 32753284 (-) False XLOC_012226

Expression Profile

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