RNA id: TCONS_00024069


Basic Information

Item Value
RNA id TCONS_00024069
length 2563
RNA type mRNA
GC content 0.47
exon number 21
gene id XLOC_012215
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 31696657 ~ 31712041 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAAGGACAACAACATGAGCTGGAAAACGTCAGGAGCTTTGCAATAAAATCTAACAGAATATCTCATTCGGCACGATGTTGAACACCACCAGCCCAAAAGCTCTTCAATCCTGTGaggaataatgttttatttaccgtTACTGAACTCTGCCATTGTGTTCATAGTGGTTTTGTTACTCACCCATTACTGTCCTCTTCATCTTCAAGAATGGACGTCAGACCGAAGGAGAATTTCTCTCAAAGACAAGACACATCCGCTGTAAGACATCGAAAAACATGTAAGGTAAACGAGAGGGCTGAGATTCCTTCCCAGCCTCACAATGGGACTATTAATGGTGTAAATAAGAGGATCACCAAACGAGAAGGAGGAGAACACATCAGTTCACCCAGCAGAGATGCTCATGTGCCCGTTTTTATTTTGGCTCTGGTGATAGTGTTGTCTGTATCTACACGCTTTTACAAGATCACTGAGCCTCCTCATGTATGTTGGGATGAGACTCATTTTGGGAAAATGGGAAGCTATTACATTAATCGCACCTTCTTCTTTGATGTCCATCCGCCCCTTGGAAAGATGCTGATCGGCCTCGCTGGATACTTGACAGGTTACGATGGGACCTTTCCCTTCATAAAGCCAGGGGACAAATATGAGCACCACAATTACTGGGGGATGAGAGCGTTCTGTGCTGCTCTTGGTTCCTGTTTGCCTCCTTTTGCCTTTCTTGTTGTCCTGGAGCTCTCTCAGTCTTCAACAGCAGCGCTCATCGCAGCCTCTCTGCTCATCTTCGACACTGGTTGCATCACCCTGTCTCAGTATATCCTGCTGGATCCCATTCTGATGTTTTTCATCATGGGCTCGGTTCTGTGCATGGTCAAATTCAACACGCAAAGACTCGGGCCTTTCAGCTTCTCCTGGTGGTTCTGGCTGCTTCTGACAGGGCTATGCCTCTCTGGGTCTCTTGGTGTAAAGTTTGTGGGGCTGTTTGTCATTCTCTTGGTTGGAATCAACACAGCGCTTGATCTTTGGAGACTGCTTGGGGACCTCAGCTTATCTCTGGTGGATTTTGGGAAGCACTTACTAGCTCGAGTTTTTGGGTTGATAATGCTTCCGTTGTTCTTGTACACGACAATATTCGCCATTCATTTCATTGTCTTAAACAGGAGTGGTCCCGGAGATGGTTTCTTCAGCTCTGCGTTTCAGTCTCGCTTGATTGGAAACAATCTACACAACGCCTCCATGCCAGAGTATCTGGCATATGGCTCAGTCATAACAGTTAAAAATCTGCGAATTGCAGGAGGATATTTGCACTCTCACTGGCACCTTTACCCGGAGGGGGTTGGAGCTCACCAGCAGCAGGTTACTGCCTATTTACACAAAGATTATAACAACCTGTGGTTGGTCAAGAGACTTGACAACTCTGACGATCTCACAGGCTCACCAGAGCTCGTCCGTCATGGTGACATCATTAGACTGGAGCATAAAGAAACTACAAGAAATCTTCATAGTCATTTCCATGAAGCGCCCCTGACCAAAAAACACCTGCAGGTCACAGGTTATGGCATTAATGGAAGTGGTGACGTGAATGACCTGTGGCAGGTGGAGGTGTGTGGAGGAAGGAAGGGAGATCCAGTGAAGGTGCTGCGCAGTAAAGTGCGTTTTCTTCATCGCGCCACAGGCTGTGTGCTCTGCTCCTCTGGAAAGACCCTTCCCAAATGGGGATGGGAGCAAGTGGAGGTCACATGCAGCCCGTATGTCAAAGAGACCCCAAATTCGCAGTGGAACATTGAGGACCACATCAACCCTAAACTGCCCAACATCAGTCTTGCAGTACTCAAACCCACTTTCCTGGAGATCCTCTGGGAGTCTCATATTGTGATGATCAGGGGAAACAGTGGTTTGAAGCCCAAAGACAACGAGATGAACTCTAAACCCTGGCACTGGCCCATTAACTATCAGGGATTAAGGTTTTCTGGAGTGAATGAAACTGAATACCGTGTTTATCTCCTTGGAAACCCTGTCATTTGGTGGCTGAACTTGTTAAGTCTGGCTCTATTTGTAATCCTGCTGACGGTGGCTTCATTAGCCGTGCAGAGAAGAGTGAAGATGGAGGGAATGATGAAAGTGCATTGTCACACACTTATGGAGGGTGGCGGGATGCTGTTTTTGGGTTGGCTGTTACACTATCTCCCATTCTACATCATGGGTCGCATACTCTACTACCATCATTACTTTCCTGCCATGATGTTCAGCAGTATGCTAACAGGTATTACTCTGGACATCCTCCTTCAGAATTTGCAGCTTCTCTTTAGCTCATCTTTATCTCATTACCTGATGAGGGGAGGTCAGTCGGTGCTCCTCTTAGGGTTTATCTACAGCTTTTATCTTTTCCACCCTCTCTCCTATGGCATGAGAGGGCCGCTGGCACATGACTCTGCCTCCTCCATGGCCGGTCTCAGGTGGATGGAATCCTGGGAGTTTTAGACAAACGTTTTAAGTGTTTTCACTtgataaaatgttttcaaaactatttcatttGTTACATGTTCACATTTCCGTGTTGAAGG

Function

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0006493 protein O-linked glycosylation biological_process
GO:0071712 ER-associated misfolded protein catabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function
GO:0000030 mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1002 Enables dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; fin bud; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in lissencephaly and muscular dystrophy (multiple). Orthologous to human POMT2 (protein O-mannosyltransferase 2).

Ensembl:

ensembl_id ENSDART00000077307

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024063 lncRNA downstream 85432 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024933 lncRNA downstream 336446 31349711 ~ 31360599 (-) False XLOC_012207
TCONS_00024054 lncRNA downstream 344798 31349711 ~ 31352247 (-) False XLOC_012207
TCONS_00024050 lncRNA downstream 475509 31218882 ~ 31221536 (-) True XLOC_012205
TCONS_00024042 lncRNA downstream 511802 31182644 ~ 31185243 (-) True XLOC_012203
TCONS_00024934 lncRNA upstream 415881 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024935 lncRNA upstream 415881 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024075 lncRNA upstream 655090 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024079 lncRNA upstream 679040 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024085 lncRNA upstream 919098 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024066 mRNA downstream 1788 31667625 ~ 31695257 (-) False XLOC_012214
TCONS_00024067 mRNA downstream 1828 31686665 ~ 31695217 (-) True XLOC_012214
TCONS_00024065 mRNA downstream 37375 31652640 ~ 31659670 (-) True XLOC_012213
TCONS_00024064 mRNA downstream 57200 31623356 ~ 31639845 (-) True XLOC_012212
TCONS_00024062 mRNA downstream 85353 31606635 ~ 31611692 (-) False XLOC_012211
TCONS_00024071 mRNA upstream 5176 31717192 ~ 31719071 (-) True XLOC_012216
TCONS_00024072 mRNA upstream 93759 31805775 ~ 31819837 (-) True XLOC_012217
TCONS_00024074 mRNA upstream 653925 32365941 ~ 32370047 (-) False XLOC_012220
TCONS_00024077 mRNA upstream 679079 32391095 ~ 32426392 (-) False XLOC_012221
TCONS_00024078 mRNA upstream 679079 32391095 ~ 32426413 (-) False XLOC_012221
TCONS_00024057 other downstream 312497 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 336446 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 785423 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 795173 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 1061750 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024073 other upstream 534113 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 679040 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 711418 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024092 other upstream 1034376 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 1038159 32750175 ~ 32753284 (-) False XLOC_012226

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_03546199_03556875.mRNA True 2394 mRNA 0.47 19 CI01000189 3546199 ~ 3556875 (-)
bowfin (Amia calva) AMCG00000439 True 2334 mRNA 0.55 21 CM030141.1 14590800 ~ 14597614 (+)