Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00024070 |
| length | 722 |
| lncRNA type | retained_intron |
| GC content | 0.38 |
| exon number | 5 |
| gene id | XLOC_012215 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 31696657 ~ 31712041 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035269 | protein O-linked mannosylation | biological_process |
| GO:0006493 | protein O-linked glycosylation | biological_process |
| GO:0071712 | ER-associated misfolded protein catabolic process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004169 | dolichyl-phosphate-mannose-protein mannosyltransferase activity | molecular_function |
| GO:0000030 | mannosyltransferase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070112-1002 | Enables dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; fin bud; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in lissencephaly and muscular dystrophy (multiple). Orthologous to human POMT2 (protein O-mannosyltransferase 2). |
| ensembl_id | ENSDART00000130709 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024063 | lncRNA | downstream | 90728 | 31608540 ~ 31611613 (-) | True | XLOC_012211 |
| TCONS_00024933 | lncRNA | downstream | 341742 | 31349711 ~ 31360599 (-) | False | XLOC_012207 |
| TCONS_00024054 | lncRNA | downstream | 350094 | 31349711 ~ 31352247 (-) | False | XLOC_012207 |
| TCONS_00024050 | lncRNA | downstream | 480805 | 31218882 ~ 31221536 (-) | True | XLOC_012205 |
| TCONS_00024043 | lncRNA | downstream | 517098 | 31182644 ~ 31185243 (-) | False | XLOC_012203 |
| TCONS_00024934 | lncRNA | upstream | 422388 | 32127897 ~ 32135852 (-) | False | XLOC_012218 |
| TCONS_00024935 | lncRNA | upstream | 422388 | 32127897 ~ 32136128 (-) | True | XLOC_012218 |
| TCONS_00024075 | lncRNA | upstream | 661597 | 32367106 ~ 32368787 (-) | True | XLOC_012220 |
| TCONS_00024079 | lncRNA | upstream | 685547 | 32391056 ~ 32408399 (-) | False | XLOC_012221 |
| TCONS_00024085 | lncRNA | upstream | 925605 | 32631114 ~ 32635778 (-) | True | XLOC_012223 |
| TCONS_00024066 | mRNA | downstream | 7084 | 31667625 ~ 31695257 (-) | False | XLOC_012214 |
| TCONS_00024067 | mRNA | downstream | 7124 | 31686665 ~ 31695217 (-) | True | XLOC_012214 |
| TCONS_00024065 | mRNA | downstream | 42671 | 31652640 ~ 31659670 (-) | True | XLOC_012213 |
| TCONS_00024064 | mRNA | downstream | 62496 | 31623356 ~ 31639845 (-) | True | XLOC_012212 |
| TCONS_00024062 | mRNA | downstream | 90649 | 31606635 ~ 31611692 (-) | False | XLOC_012211 |
| TCONS_00024071 | mRNA | upstream | 11683 | 31717192 ~ 31719071 (-) | True | XLOC_012216 |
| TCONS_00024072 | mRNA | upstream | 100266 | 31805775 ~ 31819837 (-) | True | XLOC_012217 |
| TCONS_00024074 | mRNA | upstream | 660432 | 32365941 ~ 32370047 (-) | False | XLOC_012220 |
| TCONS_00024077 | mRNA | upstream | 685586 | 32391095 ~ 32426392 (-) | False | XLOC_012221 |
| TCONS_00024078 | mRNA | upstream | 685586 | 32391095 ~ 32426413 (-) | False | XLOC_012221 |
| TCONS_00024057 | other | downstream | 317793 | 31384434 ~ 31384548 (-) | True | XLOC_012208 |
| TCONS_00024055 | other | downstream | 341742 | 31352195 ~ 31360599 (-) | False | XLOC_012207 |
| TCONS_00024027 | other | downstream | 790719 | 30905714 ~ 30911622 (-) | False | XLOC_012199 |
| TCONS_00024025 | other | downstream | 800469 | 30900772 ~ 30901872 (-) | False | XLOC_012199 |
| TCONS_00024018 | other | downstream | 1067046 | 30621420 ~ 30635295 (-) | True | XLOC_012194 |
| TCONS_00024073 | other | upstream | 540620 | 32246129 ~ 32246255 (-) | True | XLOC_012219 |
| TCONS_00024076 | other | upstream | 685547 | 32391056 ~ 32401688 (-) | False | XLOC_012221 |
| TCONS_00024082 | other | upstream | 717925 | 32423434 ~ 32426104 (-) | True | XLOC_012221 |
| TCONS_00024092 | other | upstream | 1040883 | 32746392 ~ 32752905 (-) | False | XLOC_012226 |
| TCONS_00024093 | other | upstream | 1044666 | 32750175 ~ 32753284 (-) | False | XLOC_012226 |
