RNA id: TCONS_00024934


Basic Information

Item Value
RNA id TCONS_00024934
length 1778
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_012218
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32127897 ~ 32136128 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCTTACCATCCCTTTGTGAAGCACAAACATATACAGGTAACACAAAAGAACACCTGTGATGATATTGAGGTCTTAAAAAACATCTGTGATGATATTGAGGTCTTACAAAGCAAAATGaccactcattcacaaacataaacTGCAGACAgtatagtttattcaattcaccaatagcgcatgtcgttggactgtgagggaaaccggaacacccagagtaaacccacacCAATACATGGAGAACaagcaaattccacacagaaatgccaactgacccagctgggacttaaaccagcaaccttctttctgtgagatgacagtgctaaccactgagccaccatgtcgccccataCAAATTATCATTCAACATATTTTGTTTGTTAGGAGAATTACAGAGCAGTTTTTGTTCGACCAGTACATGCTCTAGTGCATCATCAACTACAACAGAGCAATGGAGGAAaacctgaggaaaaaaaaattctgtcatgttTACTAATGCACTGGTTGTTTCAGAAAGTGTCTTAGTTTCCTAAAGAACAAAGAAACCCATTCACTAAAGAATCAGTTTGTTACtgacattcttccaaatatcctactttgtgttcagcagaacaaaGAAAGAACCAGAgcatgagtaaacgatgacagaatttgtaTTTGTGGTGAAATAACACTTTAATATAACAAAATACGAGCAAATAGCGAAGACGTTATGTCAGAGAATATATTACAATAAGATGAGAGGGACTGAATTACTTGTCATTGGATAAAGCATAATGCTAAGTTGGTCACGTGAGCCAGCTCTTAGCCAATCACAAAATGGCCTTTGTTCTCCTTCCTAGTGTACTACCATAGAGACAGCATTACATTCTATAGGCATATACCATGTTAATTACTTcgcaatatttcccaaatgatgtttaacagagcaaggaatataataaataaataatatttttttcttctggaaaaagtcttatttgttttacttcagctacaataaaagccgttgttaatttttaaaagcagttttaaggtcaaattattagcccctttaagctatattttttcccgatagtctacagaacaaaccattgttttacaataacttgcctaattaccctaacctgcatagttaccctaaataccatagttaagcctttaaatgtcactttaggctgtatagaagtgtcttgaaaaatatctagtcaaatattatttactctcatcatggcaaaaataggggggggggggggggggggggttaaaattctgacttcatctgtacatactgtataatatgacattattttaatCTCAGATATTATAAAGAGCAAAAGTTATCACACCCTATTTTGCATGGCATCACTTACAAAGTTTCAGAGATATGTGAGATCAAGCAGCCATTAGTTAATTTATCCAACAATACATCATACTCTGTTAATTAAACTGGAGGATACATTGTTGTTTTCCTAAACGAACCCCTGGTTTAGAGTCTTACACTACAGCAAGTGGCTTTATACTGTACTATCAAACATACCACACAGTATGGACACACACATGCTTCCATACATCATGTGGATTCACCCAATGCAGGTCCAGTAAAAGGTGTTTTATATTTAGAACAATGCATCAGAAAGCCAAGCTCTGCTCTCAGGAGGGAGCTGCAAAGGTCTTGCTCGTCTTCAGTTCTTCGCCTCTGGTAAGAAGAGCACAGAGATATGAATCTTGTGAACAGGCACTTCCCTCAGTCACCATGTCTTTGAAGAATCTGATCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024070 lncRNA downstream 422388 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024063 lncRNA downstream 516284 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024933 lncRNA downstream 767298 31349711 ~ 31360599 (-) False XLOC_012207
TCONS_00024054 lncRNA downstream 775650 31349711 ~ 31352247 (-) False XLOC_012207
TCONS_00024050 lncRNA downstream 906361 31218882 ~ 31221536 (-) True XLOC_012205
TCONS_00024075 lncRNA upstream 231254 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024079 lncRNA upstream 255204 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024085 lncRNA upstream 495262 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024936 lncRNA upstream 610540 32746392 ~ 32753284 (-) False XLOC_012226
TCONS_00024094 lncRNA upstream 627491 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024072 mRNA downstream 308060 31805775 ~ 31819837 (-) True XLOC_012217
TCONS_00024071 mRNA downstream 408826 31717192 ~ 31719071 (-) True XLOC_012216
TCONS_00024068 mRNA downstream 415856 31696657 ~ 31712041 (-) False XLOC_012215
TCONS_00024069 mRNA downstream 415881 31697045 ~ 31712016 (-) False XLOC_012215
TCONS_00024066 mRNA downstream 432640 31667625 ~ 31695257 (-) False XLOC_012214
TCONS_00024074 mRNA upstream 230089 32365941 ~ 32370047 (-) False XLOC_012220
TCONS_00024077 mRNA upstream 255243 32391095 ~ 32426392 (-) False XLOC_012221
TCONS_00024078 mRNA upstream 255243 32391095 ~ 32426413 (-) False XLOC_012221
TCONS_00024080 mRNA upstream 260536 32396388 ~ 32413147 (-) False XLOC_012221
TCONS_00024081 mRNA upstream 271869 32407721 ~ 32426392 (-) False XLOC_012221
TCONS_00024057 other downstream 743349 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 767298 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 1216275 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 1226025 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024018 other downstream 1492602 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024073 other upstream 110277 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024076 other upstream 255204 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 287582 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024092 other upstream 610540 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 614323 32750175 ~ 32753284 (-) False XLOC_012226

Expression Profile

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