RNA id: TCONS_00024075


Basic Information

Item Value
RNA id TCONS_00024075
length 950
lncRNA type retained_intron
GC content 0.51
exon number 2
gene id XLOC_012220
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32365941 ~ 32370047 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACTGCTTCTGGATCCATGAATAGATAAAGACAGAGAAAGACTCATTCAGATCCACCCAGCAGCTGAGCTGTATGTCTCACAACAACCAGAAGACTTCCTTTCACCCTTAATAAAAAACGttacttgattattttttttattttttgtggttcTCAGGGAGCTCGGATGGAGGTCTGTGAAGATTTTTTAGACGTGAAGAAGAACAGTGAATACTCTTCATGCAGTGCTCTGGAATACAATGATCTTGAGGCTGCTGAAGCCCTGGTTTACATGAGCTTCTGGAGTCAgatgtctccaaaacccaacgTCTTCAAACCTCGTCCTCTCACGCCAGCGTCAGACTCCTGTGATTCCCTCCTGCACCCTGAACCACCAGAAACCCCAAAGGATTTCGTCTCGCTCTCTTCCCTGTGCATGACCCCACCTCACAGTCCCAGCTTTACTGAGACCTCCAACATCACATCAGTGCCAGCTTCTCCCTCCCCACTTACCCGGCCCTGCCCCAGCCTCCCCAGCCCCCAGAGATCTGCATGCCCCACCATGGCCTCCATCACTCAGGTGCCCTCCTCCGGACATCCCACAGAAAGGACCACACCCCCACCCTGCAGAGCCATGGCAACCAGCGTAATCCGCCATACGGCCGACAGCTTCCTTTACCAGAACATTCCACAAGCTGTCCAGCCACAAAAGACTGAGAAAGCTCCCTCATCACCTAGCTTGTGCCACCAGCCCCTCATAGACACCACAACAGCATGTCAAAGCAGCAGATCTCCTTCAAAGGAGGAAAAGCTTTTCATTACATCCTCAACTCCTCATTCGCCACCTCCAACCTCTAGCCCACCAATCATATGCCAGATGTTTCCCATGGCCCAACCTGGAGTCATTTCAGCCACGTTTATTCAGAAGCCCAGCCCTGGGGTGAAGTCTATCCTACCACAGCCGCTCCTG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-82 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in liver. Human ortholog(s) of this gene implicated in maturity-onset diabetes of the young type 7 and type 2 diabetes mellitus. Orthologous to human KLF11 (Kruppel like factor 11).

Ensembl:

ensembl_id ENSDART00000149822

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024935 lncRNA downstream 230978 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024934 lncRNA downstream 231254 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024070 lncRNA downstream 661597 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024063 lncRNA downstream 755493 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024933 lncRNA downstream 1006507 31349711 ~ 31360599 (-) False XLOC_012207
TCONS_00024079 lncRNA upstream 22269 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024085 lncRNA upstream 262327 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024936 lncRNA upstream 377605 32746392 ~ 32753284 (-) False XLOC_012226
TCONS_00024094 lncRNA upstream 394556 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024937 lncRNA upstream 765032 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024072 mRNA downstream 547269 31805775 ~ 31819837 (-) True XLOC_012217
TCONS_00024071 mRNA downstream 648035 31717192 ~ 31719071 (-) True XLOC_012216
TCONS_00024068 mRNA downstream 655065 31696657 ~ 31712041 (-) False XLOC_012215
TCONS_00024069 mRNA downstream 655090 31697045 ~ 31712016 (-) False XLOC_012215
TCONS_00024067 mRNA downstream 671889 31686665 ~ 31695217 (-) True XLOC_012214
TCONS_00024077 mRNA upstream 22308 32391095 ~ 32426392 (-) False XLOC_012221
TCONS_00024078 mRNA upstream 22308 32391095 ~ 32426413 (-) False XLOC_012221
TCONS_00024080 mRNA upstream 27601 32396388 ~ 32413147 (-) False XLOC_012221
TCONS_00024081 mRNA upstream 38934 32407721 ~ 32426392 (-) False XLOC_012221
TCONS_00024083 mRNA upstream 239223 32608010 ~ 32621103 (-) True XLOC_012222
TCONS_00024073 other downstream 120851 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024057 other downstream 982558 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 1006507 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 1455484 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 1465234 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024076 other upstream 22269 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024082 other upstream 54647 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024092 other upstream 377605 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 381388 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024095 other upstream 406130 32774917 ~ 32779442 (-) True XLOC_012226

Expression Profile

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