RNA id: TCONS_00024076


Basic Information

Item Value
RNA id TCONS_00024076
length 611
RNA type processed_transcript
GC content 0.43
exon number 6
gene id XLOC_012221
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32391056 ~ 32426413 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttcaaagcacttcacaggacctttaaaagtTAGAAGTTATATATTGTCTGTTTTGGTGTTATAAATTACGATACATAAACATGgCATTCACAGCTGAGGACTCGGAGGAGGGCTCGGCAATGAAGAGATTACCTTATACTGAGGAGGAGTTTGGATCGCCTCCTAATAAACTGGCACGGATGGATGAGCCCAAAAGAGTTTTGCTGTATGTGCGCCGGGAGACGGAGGAGGTGTTTGATGCCCTCATGCTAAAAACTCCCACTCTGAAAGGCCTGGTGGAAGCGATTTCAGAGAAGTATGAAGTTTCTCTTGAGAAAATCGGAAAGGTCTACAAGAAATGCAAGAAAGGgatctTAGTAAACATGGACGACAACATCATCAAGCACTACTCGAACGAGGACACCTTCCAGATCCAGATGGAGGAGATGGGAGGAATGATCAAGCTCACGCTGACAGAGATTGAGTGATTTTCAGCTCCTTCTACAGACTGGTTTACACACATCTCTCTCCTCTCATCTTTCACTACAGTCTAATGAATAGGGACGAACTTGTATATGCGAACTTAAGTACTTTAAAATGCTTCAGGTATAAGTACTTAAACCGAGTGGT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048839 inner ear development biological_process
GO:0008544 epidermis development biological_process
GO:0002934 desmosome organization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0090504 epiboly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3665 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including desmosome organization; epiboly; and inner ear development. Located in cytoplasm. Is expressed in several structures, including epidermal cell; head; integument; pronephric duct; and sensory system. Orthologous to human GRHL1 (grainyhead like transcription factor 1).

Ensembl:

ensembl_id ENSDART00000149715

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024075 lncRNA downstream 22269 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024935 lncRNA downstream 254928 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024934 lncRNA downstream 255204 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024070 lncRNA downstream 685547 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024063 lncRNA downstream 779443 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024085 lncRNA upstream 229426 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024936 lncRNA upstream 344704 32746392 ~ 32753284 (-) False XLOC_012226
TCONS_00024094 lncRNA upstream 361655 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024937 lncRNA upstream 732131 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024938 lncRNA upstream 743906 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024074 mRNA downstream 21009 32365941 ~ 32370047 (-) False XLOC_012220
TCONS_00024072 mRNA downstream 571219 31805775 ~ 31819837 (-) True XLOC_012217
TCONS_00024071 mRNA downstream 671985 31717192 ~ 31719071 (-) True XLOC_012216
TCONS_00024068 mRNA downstream 679015 31696657 ~ 31712041 (-) False XLOC_012215
TCONS_00024069 mRNA downstream 679040 31697045 ~ 31712016 (-) False XLOC_012215
TCONS_00024081 mRNA upstream 6033 32407721 ~ 32426392 (-) False XLOC_012221
TCONS_00024083 mRNA upstream 206322 32608010 ~ 32621103 (-) True XLOC_012222
TCONS_00024084 mRNA upstream 229101 32630789 ~ 32636533 (-) False XLOC_012223
TCONS_00024086 mRNA upstream 255514 32657202 ~ 32698517 (-) False XLOC_012224
TCONS_00024087 mRNA upstream 260354 32662042 ~ 32698503 (-) True XLOC_012224
TCONS_00024073 other downstream 144801 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024057 other downstream 1006508 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 1030457 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 1479434 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 1489184 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024082 other upstream 21746 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024092 other upstream 344704 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 348487 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024095 other upstream 373229 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024101 other upstream 836629 33238317 ~ 33239286 (-) True XLOC_012231

Expression Profile

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