RNA id: TCONS_00024078


Basic Information

Item Value
RNA id TCONS_00024078
length 2054
RNA type mRNA
GC content 0.51
exon number 15
gene id XLOC_012221
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32391056 ~ 32426413 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGCGAGAAAAGCCAACAAAACCCGTTCTCGTACAGGCAATTCTAACGCAGCCCTCATCCCATCCTGAAAACGTTGCTCCATACAAGAAGAAGAAGGATCGGATTTACAGTACCAACTAGAAAGTCCAGTTCGACCATAAGAGATGTCACAGGAGCATGAAAATAAGCGGGCAGTGCTCGTGCTGCCCAATGATCCTGCGTACAACCAGCGGCGGCCTTACACCAGTGAGGATGAGGCCTGGAAGTCGTTCCTGGAGAATCCGCTCACAGCCGCCACCAAAGCCATGATGAGCATTAATGGAGACGAGGACAGCGCTGCGGCTCTGGGTCTGCTGTATGATTACTACAAGGTGCCACGGGACAAGAGAACAATATCCCAGCAAAAGACTGACGTCCTGGGCTCTGATGTGGATCCCAACAAAAGGAACATGTTGACCCCTCTTCAAGAGACATCAATGCAGCTAGGGGACAACAGGATCCAGGTCCTAAAAGGGGTCCCCCTGAACATTGTCCTGCCAGGAAACCAACATGTCCAAGATAAGAGAGGTCTCTTTCCCAGCCCTGACACTACAGTGACTGTGTCGATCGCTCCTGTAGCAAGCAACTCAGTGAAAACCGAGGGTCCATCACATGGTTTCTCTGTCACTGTCCCGAACCCCCACTGCGCAGAGCCAGACAGCCACACGGTGGTGTTCGACCGCCAGCTGCCCCACAACCAGTTCAGCCCAAACACACAGCCACGCACCCCAGACTCCACCTTCCCAGAAAACCCAGACGTGTTCTCGTTCCCAGGGGATCTCCAGTTACGCATGGGTCCCATCACGCAGGACGACTACGGCACTTTCGACACAGTGTCCGGGAATAATTTTGAATACATATTAGAAGCCTCCAAGTCACTCAGACAGAAGTCCGGTGATGGCACCATGACGTACCTCAATAAAGGCCAGTTTTATCCAATCACACTCAGGGAAACCGACAATGGTAAACTGCTGCAGGGGCCCATCTGTAAAGTCAGGAGTGTGGTGATGGTAGTGTTTGGAGAGGAGAAATCCAGAGATGACCAACTGAAGCACTGGAAATACTGGCACTCGAGGCAGCACACGGCCAAGCAGAGATGCATTGATATCGCGGACTACAAAGAAAGTTTCAACACCATCAGTAATATTGAGGAGATTTCATACAATGCCATTTCATTCACATGGGACATCAGCGAGGAAGCAAAGATCTTCATCTCGGTGAACTGCCTGAGCACAGACTTCTCGTCTCAGAAAGGAGTGAAAGGCCTGCCGCTGAACATACAGATCGACACCTACAGCTACAACAACCGCAGTAACAAGCCCATCCACCGCGCTTACTGCCAGATTAAAGTCTTCTGCGACAAGGGTGCCGAGCGCAAGATTCGTGACGAGGAGAGGAAACAGTCCCGGAGGAAGGTCGGGGCAGATGTCAAGGTGCCGCTCCTGCACAAGCGCACAGACATGACAGTGTTCAGGACACTGACGGATTTCGAGACGCAGCCTGTCCTTTTCATCCCAGACATCCACTTCTCTACCTTCCAGCGACATgCATTCACAGCTGAGGACTCGGAGGAGGGCTCGGCAATGAAGAGATTACCTTATACTGAGGAGGAGTTTGGATCGCCTCCTAATAAACTGGCACGGATGGATGAGCCCAAAAGAGTTTTGCTGTATGTGCGCCGGGAGACGGAGGAGGTGTTTGATGCCCTCATGCTAAAAACTCCCACTCTGAAAGGCCTGGTGGAAGCGATTTCAGAGAAGTATGAAGTTTCTCTTGAGAAAATCGGAAAGGTCTACAAGAAATGCAAGAAAGGgatctTAGTAAACATGGACGACAACATCATCAAGCACTACTCGAACGAGGACACCTTCCAGATCCAGATGGAGGAGATGGGAGGAATGATCAAGCTCACGCTGACAGAGATTGAGTGATTTTCAGCTCCTTCTACAGACTGGTTTACACACATCTCTCTCCTCTCATCTTTCACTACAGTCTAATGAATAGGGACGAACTTGTATATGCGAACTTAAGTAC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048839 inner ear development biological_process
GO:0008544 epidermis development biological_process
GO:0002934 desmosome organization biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0090504 epiboly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3665 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including desmosome organization; epiboly; and inner ear development. Located in cytoplasm. Is expressed in several structures, including epidermal cell; head; integument; pronephric duct; and sensory system. Orthologous to human GRHL1 (grainyhead like transcription factor 1).

Ensembl:

ensembl_id ENSDART00000179314

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024075 lncRNA downstream 22308 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024935 lncRNA downstream 254967 32127897 ~ 32136128 (-) True XLOC_012218
TCONS_00024934 lncRNA downstream 255243 32127897 ~ 32135852 (-) False XLOC_012218
TCONS_00024070 lncRNA downstream 685586 31702341 ~ 31705509 (-) True XLOC_012215
TCONS_00024063 lncRNA downstream 779482 31608540 ~ 31611613 (-) True XLOC_012211
TCONS_00024085 lncRNA upstream 204701 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024936 lncRNA upstream 319979 32746392 ~ 32753284 (-) False XLOC_012226
TCONS_00024094 lncRNA upstream 336930 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024937 lncRNA upstream 707406 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024938 lncRNA upstream 719181 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024074 mRNA downstream 21048 32365941 ~ 32370047 (-) False XLOC_012220
TCONS_00024072 mRNA downstream 571258 31805775 ~ 31819837 (-) True XLOC_012217
TCONS_00024071 mRNA downstream 672024 31717192 ~ 31719071 (-) True XLOC_012216
TCONS_00024068 mRNA downstream 679054 31696657 ~ 31712041 (-) False XLOC_012215
TCONS_00024083 mRNA upstream 181597 32608010 ~ 32621103 (-) True XLOC_012222
TCONS_00024084 mRNA upstream 204376 32630789 ~ 32636533 (-) False XLOC_012223
TCONS_00024086 mRNA upstream 230789 32657202 ~ 32698517 (-) False XLOC_012224
TCONS_00024087 mRNA upstream 235629 32662042 ~ 32698503 (-) True XLOC_012224
TCONS_00024089 mRNA upstream 294000 32720413 ~ 32743249 (-) False XLOC_012225
TCONS_00024073 other downstream 144840 32246129 ~ 32246255 (-) True XLOC_012219
TCONS_00024057 other downstream 1006547 31384434 ~ 31384548 (-) True XLOC_012208
TCONS_00024055 other downstream 1030496 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024027 other downstream 1479473 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024025 other downstream 1489223 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024092 other upstream 319979 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024093 other upstream 323762 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024095 other upstream 348504 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024101 other upstream 811904 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024113 other upstream 1265285 33691698 ~ 33705464 (-) False XLOC_012236

Expression Profile

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