RNA id: TCONS_00024097


Basic Information

Item Value
RNA id TCONS_00024097
length 2814
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_012227
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 32822588 ~ 32865788 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCGAGCTGTGCCCAGCTGACAGGCTTTCGAAGATGGCACAATAACAGTTCCAGTGATGCCTGACCATGACAGCACATCCCTCTTAAGTAGACAAACCAAGAGAAGAAGAGTTGACATAGGAGTGAAGAGGACTGTTGGGCAAGCATCTGTGGTTTTTACCCGCGCAAAAGCAACCTTTCTTAGTGCCATGAATCCCCACGGTTCCGAGCAGGATGTTGAGTGTTCAGTGGTGCAGCACGCAGACGGTGAGAAGTCCAACGTGCTTCGCAAGCTGTTGAAGAGAGCAAACTCTTACGAAGACGCTGTGATGCCCTTTCCAGGGGCAACCATCATATCTCAGCTTCTGAAAAACAATTTGACCAAAAATGGAGGCAGTGAGCCTAATTTCCAGGGAAGTGGCCTCTCGAGTACCGGCTCAGAGATGCAGCAGGAGGATGCTTGCAGCAACTCCTCACGGGGCAGCCCTCAGGAGTGCCTTTCACCATTCAGCAGGCCCTCCATGACCCAATTTGAGATGGAGAGGCTAACAGATGAGCATCTAAGGGCCAAACGTGCCCGGGTGGAGAACATCATCCGTGGGATGAGCCATTCTCCTAGCGTCACACTTCGTGCAGGAGATAACGATCGTGAGGGGGCAGCCCAACCCCCGAGTCCTCGTGAGAACTACCGGGAAAACAAGCGCAAACAGAAACTgccacagcagcagcagcagagttTTCAGCAGCTCGTCTCTGCACGCAAAGAACAGAAACATGAAGAACGGCGGCAACTCAAACTACAGCTGGAGGACATGCAGAAGCAGCTCCGGCAACTCCAAGAGAAGTTCTACCAGATTTATGACAGCACTGACTCTGAAAACGATGAAGATGGGAACCTCTCTGAAGACAGCATGCGCTCTGATGGAATGGACAATCGTGCCCACGACTCTGTCCCAGATCGTTCTGACAACGAAATGTCTGACCTGGATCCGGGGCACTTTTTGGATCGAGCACGCGCACTTATTCGGGAGCAGAGCATGATGGAGGGGGACAAACCCAAGCGTGATGGATCAAGAGGAAAGAGCCAGGGACCAACCTCCATGCATGCAGAGGGCAAACAATTGGCAGAAACGCTAAAACAAGAGCTCAATACAGCAATGTCCCAGGTAGTGGACACTGTGGTGAAGGTCTTTGCCAAGCCTCCACGCCCAGTTCCTCAGGTTTTCCCACCCCTGCACATGGAATCCCCTGATCGTTTCGCAGTCAATGGAGAAAATCCAAACTTCCATACTGCCAACCAGCGCTTGCAATGTTTTGGTGATGTCATCATTCCTAATCCCCTGGACACTTTTGCTAGTATGCAGGTGCCCAACTCAAATGACCAAACAGAGGCCCTGCCTTTGGTGGTGAGAAAGAACTCTTCAGATCAGACTGGGTCACTTTCCACACCTGGGGGTCACCACCACCATCCCTCTCTGCACCCCCCACCTTTATCTTCTACAATGGGTTTTAGTCCTCCCTCTTTCCGCCATCCTTTCCCCCTTCCTCTAATGGGCTACCCTTTCCAAAGCCCCTTAGGTGCCCCAACAGGGCCTTACCCAGGAAAGGATAGGTCTTCTCCTGAGTCTCTGGATCTGTCCAGAGAGACCACTAGCCTACGGACCAAGATGTCGTCCAACCACCTCAGCCACCATCGTTCCATCTCACCAACACACCCAGGGAATGAAGGCTTGTCCTTGTCCCTCATAAAGTCAGAATGCGGAGACCTTCAGGACATGTCAGACATCTCTCCATATTCAGGAAGTACAATCCAAGAGGGGCTTTCGCCGAACCATCTGAAGAAGGCCAAGCTGATGTTCTTCTACACGCGCTACCCCAGCTCCAACATGCTGAAGATGTTCTTCTCAGACGTGAAGTTTAACCGCTGCATCACATCCCAGCTGATCAAGTGGTTCAGCAACTTCCGCGAGTTCTACTACATCCAGATGGAGAAATTTGCCCGGCAGGCCATCAATGACGGCGTGACAGGGTCAGAAGAGCTGAGCGTGAGCAGAGACTGCGAGCTTTTCCGTGCTCTCAACATGCACTACAACAAGGCCAACGATTTTGAGGTTCCGGAGCGATTCCTGGAAGTGGCACAGATCACGTTACGGGAGTTTTTCAATGCCATTGTGGCAGGCAAAGATGTTGATCCTTCCTGGAAGAAGGCCATATACAAGGTCATCTGCAAGCTGGACAGTGAGGTCCCAGAGATTTTCAAATCTCCCAATTGTCTGCAGGAGCTTCTGCATGAATAGTGATTTTAATTGCTTACCAAGTTATCATCCCTTCTTCTTTTCCCGAATCTTTACAAAGTAAGAGGTAGCATTCCTATTTTTAAGTCCCAGCTACTTTTGAATGACTTAGCTgttaattctttcatttttttgtgcTTCTTTTTGGGAAAGTCTATAAAATCCTTGATTGTTTTGACTGTATTCGATCCTTACCCCATTTCCCCTTGCCTTTAAAATGGGCATTACTATGTTTACCTTACAACGGTTAACAAATGGAACTGACACCCTGAATTTCTCTCTTTCATTGGTCATTTTTTTGTTGAGGGGTTTGTTTTATCCCAGGATGTTTGCAATGTGTGATGGTTTTACTATTGCTGAATAAGACTTTGCATTTGTAGCTTGTATagatgtaattattatttatgattaataTAATTATCACCATTAATGTTATTAATGCTTGCTGCaaaaaaaaggaaggaaaagAAAGGCAAAAAAATTGACATGTGGTATTCTTGTTTCTCATGGCAATGctacagaaaataaattattctttgg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0021884 forebrain neuron development biological_process
GO:0030239 myofibril assembly biological_process
GO:0043433 negative regulation of DNA-binding transcription factor activity biological_process
GO:0048885 neuromast deposition biological_process
GO:0048886 neuromast hair cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-397 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including lymphangiogenesis; negative regulation of DNA-binding transcription factor activity; and neuromast development. Located in nucleus. Is expressed in several structures, including digestive system; mesoderm; nervous system; pleuroperitoneal region; and trunk vasculature. Orthologous to human PROX1 (prospero homeobox 1).

Ensembl:

ensembl_id ENSDART00000167292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024094 lncRNA downstream 43155 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024936 lncRNA downstream 69313 32746392 ~ 32753284 (-) False XLOC_012226
TCONS_00024085 lncRNA downstream 186819 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024079 lncRNA downstream 414198 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024075 lncRNA downstream 453810 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024937 lncRNA upstream 270569 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024938 lncRNA upstream 282344 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024098 lncRNA upstream 343530 33206780 ~ 33231714 (-) False XLOC_012230
TCONS_00024541 lncRNA upstream 343704 33206954 ~ 33209500 (-) True XLOC_012230
TCONS_00024107 lncRNA upstream 546336 33409586 ~ 33414834 (-) False XLOC_012232
TCONS_00024091 mRNA downstream 43041 32745763 ~ 32779556 (-) False XLOC_012226
TCONS_00024089 mRNA downstream 79348 32720413 ~ 32743249 (-) False XLOC_012225
TCONS_00024088 mRNA downstream 79348 32720413 ~ 32743249 (-) False XLOC_012225
TCONS_00024090 mRNA downstream 79553 32722165 ~ 32743044 (-) True XLOC_012225
TCONS_00024087 mRNA downstream 124094 32662042 ~ 32698503 (-) True XLOC_012224
TCONS_00024099 mRNA upstream 369498 33232748 ~ 33289304 (-) False XLOC_012231
TCONS_00024100 mRNA upstream 370412 33233662 ~ 33289349 (-) False XLOC_012231
TCONS_00024102 mRNA upstream 525649 33388899 ~ 33405301 (-) False XLOC_012232
TCONS_00024103 mRNA upstream 526499 33389749 ~ 33407843 (-) False XLOC_012232
TCONS_00024104 mRNA upstream 541681 33404931 ~ 33412868 (-) False XLOC_012232
TCONS_00024095 other downstream 43155 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 69313 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 69692 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024082 other downstream 396493 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024076 other downstream 420909 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024101 other upstream 375067 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024113 other upstream 828448 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024114 other upstream 836129 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024124 other upstream 2365338 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 2754736 35617986 ~ 35618104 (-) True XLOC_012246

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00003754 True 2172 mRNA 0.60 3 CM030121.1 17275642 ~ 17291950 (-)