RNA id: TCONS_00024937


Basic Information

Item Value
RNA id TCONS_00024937
length 3180
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_012228
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33133819 ~ 33138376 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cctggttaaactttctgacacctctGTCGCACTCATGTACATTGGATCATTatactgaacatggaggatggtctccaagtggcgttcttcaaaattaaacaatgaatagacttgggcctattggtatgtgtgtttataaccacctcagaggatatttgGGGTCATGAGTCACTGTATTGTTACTTTGAGGgtcaggctgaaaagtttgggaacccctgatctgtTGAATTAAGTAATTTTTGTTAAACTAAGCAAAGCTAAATGTAACATTGTTTGCAAAGTAAATTTCATTTTGTCATTTGAAGTTTAAACTTAATATTACTCTCTTTAAAGTATTTTACTTTCTATTGTTTGGCAAGTCTTACTCAAACCACATAGCAGATGCCACAATGCATGATGAAAACACCAGAATCAGAAAGTTGAGTAGGCTTTACTTAATTTTACTACTTTGGTATTTCCTTAAAGAGTCCTTGCAAACATAATAAACCAAAAATACACTTCTACATTCAAGGCTTAATTTCTACAAGCTTGAATcaagcccagcaggcacacaatgtcaaaaGACATAAATGTTAGGTTAGAtataggtcatgatgtcaggtaaccaaaattcaatgtctagccagcatccaaggacaacgttattttgatgtccaataacaatgtcaaatgacaacccaggctcattccgaaaaatgacccctatatacatttatagagagagcaaaatatgtcccagaagctatgtttatttgcagtttttgtttgttttgttttcgtggatccgccagaggccgctaagaatgctttttcagatctcaaatttctcttgtaccatttgcgcctgctgttatcatgttaatccaccagaggccgctgttgattaACTGACTGACCAGCCAACTGATTGTTTTGGaactttctggaaccattttttCAGCGGACTTGAACCTCGTTGTCGCAGTCACCTCTggtctgcatctcaagtctgccgacatacgTGTCGAGCTACTGGACTAGTAACAGTGGATAAgtcgtccacatggaggtaagctgtcagctgctagcgagaaaaggaacagcaCCATACTGCCTTGTAGcgttctttttaaaaacaaaatgcagccatacgtacctctggctacataattcctgttatccagaaatgtatatagggctacgttttcagaatgagtctatatttttaaaattatgttgatatttgattgattttaggttgtgttggaaagtgaccaaaatccaacgtcgagtcaacatcttaaacccacgtcatattgacgtctaatactgacatttatttgtcaggtacgGCAACTAAATCCAATGTCAAATAGACATCTTCTTGGTAATGTCCACAAAACGTCAAGCTATAACAACATTagacgctgatatttggttgattttaggttggactttggacattgatgttggcctAACGTTGGGTTTTGACTTCAACCTGAGGTACAATGTCAATGTGATGTCATGTTGActtcctgtgcctgctgggtagtatagaataaaatttttttaaactaagactcctattttttttatatttttttcccctctgATACTTCACAGAATCCTTTTGAATCAGTGTATGAAGCTGTTTTCCTCACAGGCCAAACTTGACACACACcaaaacccatacacacacactgaacaacaGAAATGACACAATTAGCGAAGAAGAGTCAATTTCAGCGTGTAAAACTATGCTCTGCTCTCATTGGCTGGAAGTTTGGGCACAATATCAGACATGCAGCTTTATCTCGGCATCACAAGAGAGACGCTGAAAAAGAGGCCTGATCGTAATATCTGTTTTCCCTCTCCCCGCCTGCTGTGTTTCGCTAAGCTTTATCAAACAGCCGTGTGTTTGTTTGCAAATGCAGGATTTCACGGGTCATCCTTTATCAGCTCGCTCTCCCGTCACCTCCAGACTTCCCAGCATATTGTGCCATGTTTTCTCCGTTGGCTCTGAAAAAGCTGTTCAAGCTGGCCAGTACGTCCTGgctagtgtatgtatgtgtgtgtgtggctgtgcgAAGGGAGCCATCTCTTCTCCAAAACACATGGCCACCCTCCTTCGCTAAATCATGAGCTGCTTTTGAGGAGCAATGCAGAGAGCGTTCGACCGATCTGCAGCGGTTTTATTGACACATTCAGAGCTGCTAACAATGTTATCACCGCAGCACCAGACTATGGAGAAGATTCATGCTGAGGCGTCCTGAAGGTGTTAGCAATCGGCTAATCAGTGTATTTCTGTGGTGATCCCTTCAAAGGATTGCGACAAGGTCCAAGCAGATCGTCCGGTCCTTCCGGTTTTTAAATAGGACACAAGGCTGTGGAAAACAAAAGAAGCCATATTAATGGCGGAACGCTGTCAGATAAAACATCCTCCGCTATGAGCTTCcaagtcagGGCCCCCGGGTGCCACGGGGCTTAGGGGGCCCCCTGAGGCCGACGGAGGGGCCCCCGGCGCGGAGCTGAAGGTCTTCAGGGTCCTGACAGCGTTGATGGAGGTGATTCTTGAGTGGCCTCTCGCAGCGTTCAGTGGTCGGCCGCAGCGAGCCGCGGCTTTTGAAGTGATAGATCTTAAGGATATGAAACAAAAGTAGGGTTGGATTGAACTTCATCTGCCTACAGGGGAGGGAAAGCAGTGAAGTGAGATGGGAGAGTTGTTGGGTGGAGGTGCTGGGTCACCGGTGAGCCACAAGAAAAGAGCCTTTAATCCGAGCATGTCTTGTAAGGTCAGGAAAAGTTCGCAGGATGAAAAAAGGTCAAGCCAAAGGTTGTGCTGATTTATTTAGTGCCACATAGGGCAATCGTTTCACCTGTACCcctctggcaaaaaaaaaaaaaagaagtcactTTGATTTGGCTGGGATGGAAAGGTACTGTACGTGATGAGCATGATTAATATGTAAACATACTGTAGCATTAATATATGAACCTACAGTATGTACTGGTCAGATTTATTTGAACTGATTATTTTGAGGGGATATTTACTTAATGTATTCACCATATATGTCTGGATAAATTAGTAAGGTAATACATTAGGAATTATGTGGGATTaggaatgtaaaataagatcatactttaaatgctaataaactgttaatatgttacaaataatttattaatatcttagcagttata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024094 lncRNA downstream 354377 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024936 lncRNA downstream 380535 32746392 ~ 32753284 (-) False XLOC_012226
TCONS_00024085 lncRNA downstream 498041 32631114 ~ 32635778 (-) True XLOC_012223
TCONS_00024079 lncRNA downstream 725420 32391056 ~ 32408399 (-) False XLOC_012221
TCONS_00024075 lncRNA downstream 765032 32367106 ~ 32368787 (-) True XLOC_012220
TCONS_00024938 lncRNA upstream 7218 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024098 lncRNA upstream 68404 33206780 ~ 33231714 (-) False XLOC_012230
TCONS_00024541 lncRNA upstream 68578 33206954 ~ 33209500 (-) True XLOC_012230
TCONS_00024107 lncRNA upstream 271210 33409586 ~ 33414834 (-) False XLOC_012232
TCONS_00024110 lncRNA upstream 279886 33418262 ~ 33456442 (-) False XLOC_012233
TCONS_00024096 mRNA downstream 268031 32822588 ~ 32865788 (-) False XLOC_012227
TCONS_00024097 mRNA downstream 270569 32822597 ~ 32863250 (-) True XLOC_012227
TCONS_00024091 mRNA downstream 354263 32745763 ~ 32779556 (-) False XLOC_012226
TCONS_00024089 mRNA downstream 390570 32720413 ~ 32743249 (-) False XLOC_012225
TCONS_00024088 mRNA downstream 390570 32720413 ~ 32743249 (-) False XLOC_012225
TCONS_00024099 mRNA upstream 94372 33232748 ~ 33289304 (-) False XLOC_012231
TCONS_00024100 mRNA upstream 95286 33233662 ~ 33289349 (-) False XLOC_012231
TCONS_00024102 mRNA upstream 250523 33388899 ~ 33405301 (-) False XLOC_012232
TCONS_00024103 mRNA upstream 251373 33389749 ~ 33407843 (-) False XLOC_012232
TCONS_00024104 mRNA upstream 266555 33404931 ~ 33412868 (-) False XLOC_012232
TCONS_00024095 other downstream 354377 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 380535 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 380914 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024082 other downstream 707715 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024076 other downstream 732131 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024101 other upstream 99941 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024113 other upstream 553322 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024114 other upstream 561003 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024124 other upstream 2090212 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 2479610 35617986 ~ 35618104 (-) True XLOC_012246

Expression Profile

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