RNA id: TCONS_00024100


Basic Information

Item Value
RNA id TCONS_00024100
length 2782
RNA type mRNA
GC content 0.50
exon number 22
gene id XLOC_012231
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33232748 ~ 33289349 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACTCTCTCCATCTCCTCCCCCTCTGCCTCTCTCATTGTTGAATGGTCAGGGGGGTGTGAATGTGTTCATCTTTGCCGAGGAGGGGCTTTGCGTGCGGCACGAGtctgtgtgtgtacctgtgtgtgtgttagacCAGCATTGTTCCTGATAGAGGGAAAGCTGTGCCGCGCTGTTTGGAAAATCCAAGGTCATTGGAGAACAGTCACATGCGCCGTAtgcatgtgtgagtgagtgagtgagtgagtgagtgtgtgtctcTCTCGTTCTGTCTTTCTCTCTGGCTATGTGACAGAAAAAGAGAGGCTTCAGGCAAAGAACAGAGAATTTCATCAGGTTTTCCATCAATGTACGGTGTGTGTGGATGCTGTGGGGCTTTGAGACCCCGTTATAAGAGGCTGGTGGATAACATCTTTCCTGAAGACCCTGAGgaCGGTCTGGTAAAAGCTAACATGGAGAAGCTTACCTTTTACGCCTTGTCTGCTCCGGAGAAACTAGACCGTATCGGTGCCTACCTTTCAGAGAGACTATCCAGAGACGTTGCCCGGCATAGATATGGGTATGTTTGTATTGCCATGGAGGCTTTGGACCAGCTTCTGATGGCCTGTCACTGTCAAAGTATAAACCTTTTTGTGGAGAGTTTCCTCACTATGGTGCGCAAGCTGCTAGAAGCCGACAAACCCAACTTACAGATCCTGGGCACAAACTCATTTGTGAAGTTTGCAAACATAGAGGAGGACACAGCATCATACCACCGCAGCTATGATTTCTTTGTCTCCCGCTTCAGTGAGATGTGCCATTCCAGCTTCGAGGATCCAGATATTCGCACAAAGATTCGTATGGCAGGGATCAGGGGGCTTCAAGGGGTGGTGAGGAAGACTGTCAATGATGAGCTGCAGGCAAATATTTGGGACCCTCAGCACATGGACAAAATTGTGCCGTCACTCCTGTTCAACCTCCAGCAAGAAGAAGGCATTGAGAGGTCTCCTTCTCCAGAGACAGAGAAGGAGAAGGAGAGTCCGGTGGAGCTGACGGAGAGATGCTTTCGAGAGCTGCTGGGACGAGCGGTTTACGGAAACATCAAGAACGCCGTCAAGCCTGTGCTCATGCACCTTGATAACCATTCACTCTGGGAGGGCAAAACATTTGCAGTGCGCTGTTTCAAAATCATTATGTACTCCATTCAGTCCCAGCATTCTCATCTGGTGATTCAGCAGCTTTTGGGCCACTTGGATGCCAACAGTAAGAACTCAGCCAGAGTGCGTGCTGGGATAGTGGAGGTGATCTCAGAGGCAGCTGTTATAGAGGCCAGTGGCTCTATAGGTCCCACAGTACTGGAGGTGTTTAATACTCTACTAAAGCAGCTCAGACTTAGCGTAGACTACGAGCTCACTGGATCCTACGACTCTTTTGCAAACATGGGCACCAAGGTCATTAAAGTACATGAGGAGAGACAACTCCAAGAATCTGTCATCAAAACTATTGGCTCGTTTGCAAACACGCTACCCACCTACCAACGTTCTGAAGTCATGCTGTTCATCATCGGTAAAATCCCTGTGCCAGGCATGTATCCTGCTCTGGGGTCAGCCAACACTGGGGTTGAGGGCAGTAGGATGATCCAGATTATGCTGCTCAAGTCTCTGCTGCAGGTCACAGCAGGATTCCAGTCTAACAACATTTTGACAGCACTTCCCACATCCTTCCTGGACCCTCTTCTGTCCTTCACTCTGATGGAGGACGCTGAGATCCGTCTGCTCGTGCTCGACATCCTCATCAGCATCATCGATCGCCATGACAACCGGCACAAATTTTCACCTGTCAGAATTATATCAGACATCTCAATACTGAAGCTGAAAGTAGACAAGTGCTCCAGACAGGATAACTTGTTCATGAAGAAACACAGCCACAGATTGTACCGTCACATTTACTTGGCCTGTAAAGAAGACAGCAGCGTCCAGCGGCACTTTGAGTCTCTTCATACACTGCTAGGGTTGATCTGTGTGGAGCTCGCCAATGAGGAGGTGGTGGTGGACCTTATCCGACTGGCTTTGGCCTTACAGGACCTTGCCTTGACTGATGACACACTTCCTGTTTATTCCCGCTGTGCCATCCATGCTCTGTCTGCTGCATATCTCAACCTCATCAGCCAACTGACCACTGTGCCCACCTTCTGCCAACACGTCCATGAGGTAATTGAATCAAGAAAGAAACTTGTTCCGTTCCTGCTGCCAGAGGATGTTCTTGTTGAGAGTCCAAAGATCCCGGAGAAGCTGGAGAAGGTGGAGGGAGAGATGCTGTTTGCACAGGCTAAGATAGCAGAGATGCTGGGCGGTAGCGGATATAACACAGAGAGACTGGCCACTGCGTACATCCCACAGATCACAGatgaAGACAGACTGTCTAAGAGGAAGAGTATTGGAGACACAGTCTCTCTCCAGTTAGAGATGGAGTCTAGAAACAGTCCAGAGAAAGAGCAGAGGTCCACAGCAGAGCAGATAACATTTGAAACTCTTAAACAAGCCATTGTAGACAGCGTGAATGTGGAGGAGCTGGAGAGAGAGCGCAGAAGACAAGTGGTAGAGAGGTTTCAGACCGCTCCATTTGAGGAGATTGCAGCCCACTGTGGGGCCAGGTCATCCCTGTTGCAGAGTAAACTAAACCAAATCTTCGAAATCACAATCAGGCCTCCACCAAGCCCGTCTGGCTCTGTCGGTAACGGTCACGGCCGGAGTCGCTCTGTACCAGTCTACGAGATGAAGTTTCCAGACCTCTGTGTATACTGA

Function

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-64 Predicted to be involved in protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human EFR3B (EFR3 homolog B).

Ensembl:

ensembl_id ENSDART00000040346

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024098 lncRNA downstream 1948 33206780 ~ 33231714 (-) False XLOC_012230
TCONS_00024541 lncRNA downstream 24162 33206954 ~ 33209500 (-) True XLOC_012230
TCONS_00024938 lncRNA downstream 71184 33145594 ~ 33162478 (-) True XLOC_012229
TCONS_00024937 lncRNA downstream 95286 33133819 ~ 33138376 (-) True XLOC_012228
TCONS_00024094 lncRNA downstream 454220 32763343 ~ 32779442 (-) False XLOC_012226
TCONS_00024107 lncRNA upstream 120237 33409586 ~ 33414834 (-) False XLOC_012232
TCONS_00024110 lncRNA upstream 128913 33418262 ~ 33456442 (-) False XLOC_012233
TCONS_00024939 lncRNA upstream 166646 33455995 ~ 33460893 (-) True XLOC_012233
TCONS_00024940 lncRNA upstream 275533 33564882 ~ 33571806 (-) False XLOC_012235
TCONS_00024542 lncRNA upstream 276377 33565726 ~ 33570319 (-) False XLOC_012235
TCONS_00024096 mRNA downstream 367874 32822588 ~ 32865788 (-) False XLOC_012227
TCONS_00024097 mRNA downstream 370412 32822597 ~ 32863250 (-) True XLOC_012227
TCONS_00024091 mRNA downstream 454106 32745763 ~ 32779556 (-) False XLOC_012226
TCONS_00024089 mRNA downstream 490413 32720413 ~ 32743249 (-) False XLOC_012225
TCONS_00024102 mRNA upstream 99550 33388899 ~ 33405301 (-) False XLOC_012232
TCONS_00024103 mRNA upstream 100400 33389749 ~ 33407843 (-) False XLOC_012232
TCONS_00024104 mRNA upstream 115582 33404931 ~ 33412868 (-) False XLOC_012232
TCONS_00024105 mRNA upstream 119689 33409038 ~ 33414828 (-) False XLOC_012232
TCONS_00024106 mRNA upstream 120216 33409565 ~ 33415740 (-) False XLOC_012232
TCONS_00024095 other downstream 454220 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 480378 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 480757 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024082 other downstream 807558 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024076 other downstream 831974 32391056 ~ 32401688 (-) False XLOC_012221
TCONS_00024113 other upstream 402349 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024114 other upstream 410030 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024124 other upstream 1939239 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 2328637 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024140 other upstream 3345723 36635072 ~ 36635189 (-) True XLOC_012252

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000062_03575943_03597236.mRNA True 3899 mRNA 0.44 20 CI01000062 3575943 ~ 3598565 (+)