RNA id: XR_005051889.1


Basic Information

Item Value
RNA id XR_005051889.1
length 869
RNA type mRNA
GC content 0.35
exon number 2
gene id LOC118964682
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1327322 ~ 1328266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACATGAACCCACTACACATTCAGCAACTTTAGGTTGATCTCTATAGAACCACTGTAAATGACATGAACCCACTACACATTCAGCAACTTTAGGTTGATCTCTATAGAACCACTGTAAATGACATGAACCCACTACACATTCAGCAACTTTAGGTTGATCTCTATAGAACCACTGTAAATGACATGAACCCACTACACATTCAGCAACTTTAGGTTGATCTCTATAGAACCACTGTAAATGACATGAACCCACTACACATTCAGCAACTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGAACCCACTACACATTCAGCAACTTTAGGTTGATCTCTATAGAACCACTGTAAATGACATGAACCCACTACACTTTCAGCAACTTTAGGTAGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTTTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTGAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTGAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGATCTCTATAGAACCACTGTAAATTACATGTTTAGGTTGAGAAACTcaaaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU808 lncRNA upstream 11669 1315407 ~ 1315653 (+) True G649
TU851 lncRNA upstream 17774 1308768 ~ 1309548 (+) True G683
TU842 lncRNA upstream 58962 1267352 ~ 1268360 (+) True G678
TU843 lncRNA upstream 59241 1267396 ~ 1268081 (+) True G679
TU836 lncRNA upstream 72575 1253014 ~ 1254747 (+) True G674
TU872 lncRNA downstream 8048 1336314 ~ 1348949 (+) True G696
TU874 lncRNA downstream 18740 1347006 ~ 1349562 (+) True G697
TU920 lncRNA downstream 159302 1487568 ~ 1488987 (+) True G740
TU925 lncRNA downstream 167307 1495573 ~ 1496694 (+) True G745
TU951 lncRNA downstream 227996 1556262 ~ 1556636 (+) True G767
XM_036978109.1 mRNA upstream 26698 1173713 ~ 1300624 (+) False cyfip1
XM_036978157.1 mRNA upstream 26698 1173713 ~ 1300624 (+) False cyfip1
XM_036978210.1 mRNA upstream 26698 1173713 ~ 1300624 (+) False cyfip1
XM_036978261.1 mRNA upstream 26698 1193232 ~ 1300624 (+) True cyfip1
XM_036978300.1 mRNA upstream 27881 1173711 ~ 1299441 (+) False cyfip1
XM_021608164.2 mRNA downstream 5831 1334097 ~ 1398380 (+) True gabrb3
XM_036978985.1 mRNA downstream 131801 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA downstream 133227 1461493 ~ 1596619 (+) True atp10a
XM_036979059.1 mRNA downstream 404523 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 404528 1732794 ~ 1770434 (+) False LOC110520782
TU710 other upstream 317115 1003783 ~ 1010207 (+) False G583
TU707 other upstream 318169 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1007348 318047 ~ 319974 (+) False G166
TU83 other upstream 1197059 120466 ~ 130263 (+) True G51
TU80 other upstream 1207015 112959 ~ 120307 (+) True G50
TU1201 other downstream 750632 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 750632 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 750632 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 930617 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 930617 2258883 ~ 2263565 (+) False G998

Expression Profile