RNA id: XR_005052028.1


Basic Information

Item Value
RNA id XR_005052028.1
length 4823
RNA type mRNA
GC content 0.52
exon number 34
gene id tmem131
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1859377 ~ 1967576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCATGCAAGCAGTTGCCCCTTCACACGGATACCGAGACACACAGCAGCATGGCGAGCCGGGAAAGAGCACAGAGTTTTCTTCACTCATCAACAAAAACTAAATTGTCATGCGTAGGATTGCTGCGGGTTTTATTTATTACTTTTATACACACGGCGCAGGCGAACAAACAAGCGTTCATACAGTCAGACACAATCCTCAAGGTGCTACACTTTGGAGAAGGAGGTCTCTTACAGACAGAGTTTGACTGTGATCTAAGTTTATATAATCGAAAAAGGCCTGTGGGGATGCCAGCAATGGAAAATATTTACTTGAATAATCCCAGCTCAGAAGAAATTAGTTTGATATCAATATCAGCAACAACAGCACATTTTCATCCATCCTATTTCCAGAATGTGATAATCCCAGCAGGGGGAAACACGTCGTTTGATCTCGTGTTTCTCGTAGGGAACATAGAAAATACTTTATTTATTAATACGGCGAATCATGGAGTGTTTACATACCAGGTGTTCGGGGTGGGTATCCCCAACCCCTACAGACTACGGCCCTTCATCGGGGCCAGAGTCCCTGTTAACGGCAGCTTCTCTCCACTCATAAACATCCACAACCCTCACAGTGAACCACTGCAGGTTGTGGAGATGTTCTCCAGTGGAGATCACCACCATCTGGACCCGCCTACGGGTCAACAAGGAGGCACCAGAACATTCTGGGAGATCCCTCCGTTTGAGACGAAGGGTGTGATGAGGGCTAGCTTCTCGTCGAGAGATGCAGACAACCACACAGCCTTCATCAGGATCAAAACCAACGAAGACCAGTTTATCATTCTGCCTGTGGAGGTCACCGCAGCCCCTGGTATATACTCCTCCACAGAGATGCTAGACTGCGGTACATTACGGTCACAAGATTGGCCGGAACAATTGAACTCACATCTACTGAATTCGGGAAGGAAAGATGTTTGGATCGCGAGTATACGGACGAGGTCATCCAACGAAGCGGTTACCATCAATTTCAAAGCAATCACCCTAAAACCAGGCGAGAGTAGATATACCAAAGTTGCAAGTATTAGTTTTGATGCATCAAAAGCAGAAAGACCGGTTCAGTTTTCTGGTAAAATAACAGTGGAGGTCAAGGAGATAAACTCATTTAAACTTGAAGTCCCGTACCAAGCAGAGGTGCTACAAGGCTACCTGGGCTTTGACCACACGGCCACGTTGTTCCACATCAGAGACAGTCCAGTAGACCCCGTGAACAGATCCATCTTCCTTACCAACGCCTTCAACTTTGCTGTCCGCATACACAACGTCACCCTGCCAGATGAGGCCAAGACCATGTTCAGCGTGCAGAACCTCAGCACCCCCGTTCTGATCCCTCCTCGTGAGTCTCGCTacatcttctctctcctgttccgcCCTTCCATCCACATCCACAGCAACATCCTCCTCAACACCAGCATCTCCAAGTTCCACCTTCCTGTCAGGGCCTACACAGGTTACCTTGAGATATTAACAATCCCAGTGAAGGCTGCGATAGCAGTGGGGAAGCTAAACAGCTATCCTGAACACATCATCCTACCTCCATCCTTTCCTGGGAAGATAGTTCACCAGAGTTTCACCATCCAGAGTTCCTTCACCCAGAGAGCGAGACTCCGACACATCCGTTCCCTGACAGAAGACATTCGGTTCTATTACAAAAGACTACGTAGTAACAAGAATGGACTGGAACCTAGACGCAAGTCCAAGGTTGCTAATATTTATTTTGATGCCGGTTTGCAGTGTGTCGACCACTGTTATGTGGGGTTGCCGTTTGTTCTGAAATCTGAGGCTCGTCCCCACGGCCTGGTCTTACAGGAGGACATCTGGGATGCTGACATTGACCTCCACCAGAAACTGCTCCGACGCTGGAGAGAGCTGAAAGATCGCTCGGGACATCAAGTTGAGGCGGTGTTTGAAGTCAGCACAGATCTTCAGGAGACGGTCCAGGCAACAATAACAGCTCAACAGACCTGGCCGTCGCTGGTTAACGCCTCTCAACAAATCACATTTCCCCTCACCAGTACCAATAGCTCCTCTGAGACGGAGTTTGTTCTAGAGAACCCAGCAGATGTCCCAGTGTATGTCCAGATCCTTCCTCTGGCTCTCTACCCGAACCCCTCTGTGTTTGCTGGGAAACTCGGCGACAGCTTCCCACTGGGAATGTTGTCCGACATCGACACAAAATCACTGGAATTTCAGGTCACCAGAAACCTATCGTCTGTAATGAAGGGAAGCTCAGGGTTTGTGGAGGGCTCGACCAGACCGTTTGTCTACAACGTGCTCCTGCAGCCTGGAGAGGTCAAGTCCTTCAGCCTGAGGTTCACTCCTTCCAGCAAccactctgtctcctccctgctcaTAGTCAGGAACAACCTGACTGTGATAGATGTGATCGTGGTTCGTGGCCAGGGAACCACGGGGAGCCTGCAGGTAGCTGGGAAACTCCCTGGACCAGACAGCTCCCTTCGCTTCCAAATGACGGAGGCGTTGCTGAAGGACTGCACAGAGAAGATCAAGTCCAAAGAGCCCAAGTCCACTCTGAGAAGAACCTTCAGGGTGGAGAACGCTGGTCTACTCCCCTTGTATATCCGCTCTGCAGAGATCAACGGCCAGCCCTGCCAAGGATACGGATTCAAAGTTCTCAACTGTCAGCAATTTACACTTAAACCAAACGCTTCTGAAGACCTAGTGATACTGTTTACACCGGACTTCACGTCATCCAGAGTGATCCGGGAGCTGAAGCTAGTGACGGAGGGAGGGTCAGAGTTTGTGTTTGTCCTGAACGCCTCTCTACCTTTTCACATGCTGGCCTCCTGCACAGAGACCCTCCCCAGACCCTCCTGGGAGCTGGAGCTATACGTCATCGTCTCCCTCGTCATGAGCTCCATGTTCCTGCTGGTGATTGCTATAGCCTACCTGGAAGCCCAGGGGATCTGGGAGCCCTTTAAGAGACATCTGTCTCTGGACTCTCCCATGGAGACGGGCAGACCCTTCGATCTCAGGGAAATAGTACGCATTTCAAGTGATGCTAACTTGAATGATTTCAGCGACGCCCACCAGAACCCGACCAGGGGGATGTATGGTTCTGGTAGCGAGGTGTCCCGGGTCGGGAGCCGAAACAGCAGAGCCTCCATGGACCTTGATGGACAGAGAGCCAGGATGGACTTTGATCGATCAACTATGCAAGCCTCCTCCACCTTCTCTTCCTCCCAGCTAGCCAATGGCGCCCCGGTTTCCTGTCAGCTGACCAATCGGAAGGCGCGGAGCTCCAAGAGGCAGCAGGGTGGAGGACTCCTGGACCTCCAGAACGGGGGCCCTGGGTCAGGGTCGTCTCTGCCCCACAGAAGGTGCTGTTCTGGGGGAGAGGACCCAGACTACGCCAGCCTCCTGGGGGCCATGGATAACGACCTGAACAGACCTGAATCACCACCTCTACAGGAACACAACGTTTCTCTGCCTACACAGAACAATGTGCTAGACTCTAAAGGAAAGCAGCTGAGAGGTAAAACTaatgctcagagaaagagagcggagaaggagaggagagcaaaGGGAAAACCACCTCAGGGAGACCAGCTGAAGGATGTTTTGGAAGACAATGACGACAGCTCCTCTACCACCACAGAGACCTCCAACCCTGATGTAGAGGCCAGCAACAAAGAGGAACCAGTGAAGAAGAAGGGCAGAACAGCAGTGACTCTGGAGAAAGAGGAAACCAAACCCCAAACCAACAAGCGACAACCCAACACAAATGATCAATCTAGTTCCCTGGAGCTCCCTTACATCACAGCCCTGGAGAACAAACAACGCAAGACCTTCACATCCAAAGCCCTCATCCACTCTGCTCTCTCCACCGCCCCTACAGCTAGGACTCTGCAGAAACCCAGACCTGGGTCTCTCCCCCATCTCAACTCGTCTGATTGTTCTGTACTTGtGCCTTGTGGGAAGCTGGAGGATTCTTGTCCGTTTCCCATGGTGAAGCGGTTGTCAAACGGCTCGGTCTCGGTTTCAGAGCTGGGTCACAGCAGCAGCTCCGAGGGAGAGAAGGAGTTCGCTGCTACTGAATGGGACAACCCACTGCTCACCAGAATCACCAACCAAGCCGACAGTCTCCAGCAGACCTCCCTCCAGACCATGAATGCAGACACCTTCCTGAAGAGACCCATCTCAGCTAGGACCTACTCCCATCCCCGCTCCTCCCCCAGCCTAGTGACCAGGGGAACATACAGCCAAGTACTCAATGCCAATAGTGAGACCAACTTGAAGAAGGCACCAGGGAACAAGCTAGCTAATGCCACCTCTCTCCCGGGCAAGAATGGCAATCCTACTTTTGCAGCTGTGGCTGCGGGATACAACAGAAGCCCAGGTGGCAGTGGCCCAGGTCAAAGAGCCCAATGGAAGACTTTAGCTCACGTGACCTCAGTGGAGAGCGACAGCTCAGACAGGATTCAACCCTGCCAACTCCTTCTCTGCATTCGGACCCAACAACTCCTTCAATCTGACAGGAGTCTTCCGTGGGATGTCCTTCCCGAAGACATCCGAGCCTCAGCAGACTTGGCCTGAGTTGAGCTCTGCGTCCTCGTCTCTCTGGGACGCCACCAGCAACCCCCTGCACTCCTGGCTCAGCAGCTCCCCCACTGTCCCCACCGCATCTGTCCTGGGTAGCAGCAGGAACCCCTGGTCCAccaccaccccctttggcagctCCATCTGGTCCACTAGTGGAGACACTGCACTACACTCCTTCACTcccacctcctccaccctcccagACTTACCCAGCAGCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1071 lncRNA upstream 48224 1810668 ~ 1811153 (+) True G848
TU1056 lncRNA upstream 91012 1767838 ~ 1768365 (+) True G836
TU1042 lncRNA upstream 108166 1739281 ~ 1751211 (+) True G824
TU1001 lncRNA upstream 133557 1695529 ~ 1725820 (+) False G792
TU1006 lncRNA upstream 133557 1700764 ~ 1725820 (+) False G792
TU1162 lncRNA downstream 11817 1978107 ~ 1978417 (+) True G927
TU1173 lncRNA downstream 44652 2010942 ~ 2044901 (+) True G938
TU1178 lncRNA downstream 52800 2019090 ~ 2019513 (+) True G943
TU1185 lncRNA downstream 69566 2035856 ~ 2036555 (+) True G946
TU1187 lncRNA downstream 77063 2043353 ~ 2043710 (+) True G948
XM_036979059.1 mRNA upstream 88943 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA upstream 88943 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA upstream 88943 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA upstream 88943 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA upstream 88943 1736745 ~ 1770434 (+) True LOC110520782
XM_036940834.1 mRNA downstream 18036 1984326 ~ 2098678 (+) False nme7
XM_036941823.1 mRNA downstream 18036 1984326 ~ 2098678 (+) False nme7
XM_036941267.1 mRNA downstream 18036 1984326 ~ 2098684 (+) False nme7
NM_001160554.1 mRNA downstream 18284 1984574 ~ 2098461 (+) False nme7
XM_036979903.1 mRNA downstream 210382 2176672 ~ 2192895 (+) True dpt
TU710 other upstream 849170 1003783 ~ 1010207 (+) False G583
TU707 other upstream 850224 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1539403 318047 ~ 319974 (+) False G166
TU83 other upstream 1729114 120466 ~ 130263 (+) True G51
TU80 other upstream 1739070 112959 ~ 120307 (+) True G50
TU1201 other downstream 112608 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 112608 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 112608 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 292593 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 292593 2258883 ~ 2263565 (+) False G998

Expression Profile