RNA id: XR_005052101.1


Basic Information

Item Value
RNA id XR_005052101.1
length 4890
RNA type mRNA
GC content 0.55
exon number 13
gene id zbtb11
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2212135 ~ 2258325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCGGTTGTGCAGCAGCCATTTTGTCTGTTCATGCAAGTCCACCCCTCACGGTCAAGAACTGCGTTCCCCCTTCGAAAATAACctgaaatattgtattttttttgtatactATGTGGCACTTATACGGATTTAAAAATTACAAGTTCGAAGATGCCTTTCTCTTCGAAATAAATAGCGTATTTTTTTAGTTGTGTGCGCGAATAATTAAGGTTATGTCGTGCGAGGAAAGCTACTTAGCCATCAGACGCTATCTGACTGATGAGCGGGAGCCGTACGCACCGGGGACCCATGGCAATACTAAAAGAAAGATACGTAAAGCAGCCGCTTGCTATGTCGTGCGGAATGGCACACTGTACTACCAGAGAAGGCAGAAGGGCCTGGATGAATTCACCGAGTTGGAAGTGGTGTTGCAGGCAGGACGGAGGAAGGAACTGATCGACGAGTCACACATTGTCACCGGAGAAGAGCACCTCAACCAGCATCACACTTGGGAATCAATTTCTCAGAAGTATTGGTGGAGAGGTATCCTGAAGCAGGTGAAGGACTACATGAGACAGTGTAGGCAGTGCCAGAACAGACAGGACCGGAGAGGATTGTCAGAGGACCGGAGTGGATCCAGACTGGTGGGCCGACCAGGGAGACCAAGGAGGGTCACAACCCCAGCCAGTGACGACGatgatgaggaggtggaggaggaagaggaggaggagatggacttGGTGACTTCCATTCATCACAAGACCAAGAGCCCCAGGACTGTGGCTAAACACGAACTGGTCTTTGTGGACAGTAAAGGAGTGGTGAAGCAGTACCTTCCCAGACACGGTCAGACGATGCTGGACAAGCTGAACCAGCAGCGCCTCAACAACCAGTTCTGTGACATCACGCTGCTGATCGAGGGGGAGGAGCACAGGGCCCACAAGGCTGTGCTGGCCGCCTGCAGCGACTACTTTAATGAGCTGTTCATAGAGAAGGGAGCTGTGTCCAGTCACGAAGCGGTGGTCGACCTCTCAGgtttcaGCAAGGTCAGTTTCCTCCCTCTGCTAGAGTTTGCATACACCTCCAACCTCTGCTTCAACTTCTGTGTGATGGCCGACGTTGCCACGCTGGCCCGACACCTTCTGATGGCCGAGGTCCTTCAGATCTGTGAGTCCGTCCACAAGAAGGTAGAGGAGCAGAAGCTGATGGTCTACCAGCAAGGAGACATCCACACGGTGGTGTCCAGCCAGCCGGCACCCCAACAGGCCCCGAATGAAGACCCCGGGGCCTACATTATGACCATCGGCAGCGACGGCCATGCCGTGGTGACTCATACCGGGCTAGCTGGAGCAGGGGAGGACCTGGACTCCCTGGCTGTCGTGGAAAACACAACAGAGTCCTTCAGAGGGGATCTGACGTCTGTAGTCACCCAGGCTCTGGGAGGTGAACCAGGGGAGACTATGACCGTGGTTGGGGAGGCAGGGTCAGAGACGGTGACTCTAGTCACCCACAGTAGCCAGGCCCGGGTGGGCGAGTCGGTCACCCTCTTCTCCCCTACTGGAGAGACCGAGACCATGACGGTGGTCACCCACAGCGGCCAGGCCCGGGTAGGCGAGTCGGTCACCCTCTTCTCCCCTACTGGAGAGACCGAGACCATGACGGTGGTGACCCACAGTGGCCAGGCCGGAGCCAATGAGTCCCTGGCCGTGGTGTCAGCCTGTCTGGCCCTGGAGCAACAGCAGCATGATGAAGGGGACGAGGGGGACTCCCTCTCCGTGGAGCCGGGGGCCTTCCTCATCAGCGTGGACCCAGGGAAGGTGGCCCCTACTGAGGTGGTCCATCTGGCTGTAGAGCCACCTGTCGTCCAGGTGGATCCTGCACCCCAGGAGGAGGAGACGTCGGCGCACCAGACTGTCGATCCAGCACCCCAGGCCGAGCCCCAGCCTCCCGCTGCTCCCCAACCCCCCAAGAGGAAGAGAGGACGTCCTGCTAAGGTGAAGCATGAGGTGATCGAGGAGCCAGAGTCTCCTGTcgaggaggaggtggtagaggtgccAGAGCCGGTCTCTACTCTTGCAGAGGAGGTTCAGAGGACCCATGACCCCTATAAGAGACGCCTACGGCAGCGCtccatgggggagggggggtacgTCAGGCTACACATGGGgctggaggaggacagagaggacaagaAGGGAGCCCAGACCCCACAGCGCCCCAGCACCCCCAAGAAGAGGGGTAGACCCGCCAAGAGGCACGTTGAAGAGATGGAAGCTGCTGTGGCCGGGATGGAGAATGTTGTCCAGACAGAGACTGAGGGCGTCCAATCGCCAGACGGCATTCTATATGGAGCACCTATCACAGAGCAGCCCGTGGGGCAGGGGCCAGAGCCGAGTCAAGGCCCCGCGCAGccagatggagggagtgaggtgGAGGGAGAACACGCCTGTTCGGAGTGTGGACTGTCGTTTCACAGGCGCTACGCGCTCATCATGCACACTCTCAAACACGAGAAGACCAGAGGATACAAGTGTACTTTATGTAACAAGGAGTTTCAGTACGCTGCCTCTCTGAGGGCCCATCTGGCCAGACACAAGCACCAGAAGAGTCAGAGGCCGACCCTGGTCAGGGTCCCCCAGCCCCACGGCGAGGAGGGCCTCGAGGTGGACGGCAGGACCAAGGGACGCACCAAGAGAGAGTTTGTCTGTGACATCTGTGGAAAGACTCTTCCGAAGCTGTACTCGCTGAGGATTCACATGCTGAACCACACTGGGGTACGGCCCCACTCCTGCAGGGTCTGCGGGAAGACCTTCGCTCATAAACACAGCCTGAAGATGCACAGAGCTCTACATGACGCTGCTAAACAGTTCCACTGTCTGCTCTGTGACAAGTCCTTCGTTAGTAAGAGAAGTCTGGAGGAACACACCAGTATTCACACAGGTGAATCTAAGTATCTCTGTACCCAGTGTGGAAGGTCGTTCCACCGAGCCTCTGGTCTGAGTAAACACATTAAGAGACACCAGCCCAGACCTGAAGTACGAGGATTCCCCTGCAATCAcTGTGATAAGAGTTTCTTTGAGGCCAAAGACCTGCAGCAGCACATGAACAAACACCTGGGACTCAAGCCCTTCCAGTGTCAGGTATGTGGGAAGTGTTACAGTTGGAAGAAGGACTGGTATTCCCATGTGAAGTCCCACAGTGTGGCAGAGCCTTACAAGTGTAACGTCTGTGGTAAGGAGTTCTTTGAGAAGGCTCTGTTCAGGAGACATGTGAAGAAGGCCACGCATGGCAAGAAGGGCAGAGTCAAGCAGAacctagagagagagtgtgaacaCTGTGGCAGGAAGTTCACCCAGCTCCGAGAGTACAGACGACACATGAACAACCACCAGGGAGTCAAACCCTTTGAGTGTCTGACGTGTGGAGTAGCCTGGGCCGACGCCCGCTCTCTGAAGAGACACGTACGCACCCACACCGGAGAGCGCCCTTACGTGTGCCCCGAGTGCCAGGAAGCCCACATCGATGCCCGCTCCCTACGGAAGCACATGACCAAGTACCACGGCGACCTCCTGCCGGGGAAGATCATGCTGGAGAAAGATACCCTACAGTTTCACAACCAGGGTACTCAGGTGGAACACGCCGTCTCCATCCTGGCGTCCGATCTCCCCCCCGAGCTCCGGCCCGTCCAGCCGCCGCCGGCCGAGGAGATCGAGACGGTGCTGATCACGGAGGAGACGGTGGAGGCGGTTCAGGCCGTTCAGGGTGACGGGGTCGCGACCTTGTCAGATCAGAGCATCATGCAGGTGGTGAACTATGTGCTGTCTCAGCAGAGTGTACTGCCCGGGGGGGTGAAGATGGAGGAGCAAGAGGTTATACAAACCATGGAGGTGGTACACATGGCAGAGGTGGAGTGATGTGATGTGACAGACCAGAGGTGGAGGGACGTGACAGACCAGAGGTGGAGTGACGTGACAGACCAGAGGTGGAGTGACGTGACAGACCAGAGGTGGAGGGACGTGACAGACCAGAGGTGGAGGGACGTGACAGACCAGAGGTGGAGGGACGTGACAGACCAGAGGTGGAGGGACGTGACAGACCAGAGGTGGAGGGACGTGACAGACCAGAGGTGGAGGGACGTGACAGACCAGAGGTGGAGTGACGTGACAGACCACCTAGTGGACAGCAAGAATGACTCACATAGCCACTAATATCCCTAATCCTGAACCAGGTGGAGTGACTCTCGTATCCCTGACCTATCAGAACCCAGGTGGAGTGACTCTCGTATCCCTGACCTATCAGAACCCAGGTGGAGTGACTCTCGTATCCCTGACCTATCACAACCCAGGTGGAGTGACCTCTCGTATCCCTGACCTATCAGAACCCAGGTGGAGTGACTCTCATATCCCTGACCTATCAGAACCCAGGTGGAGTGACTCTCGTATCCCTGACCTATCAGAACCCAGGTGGAGTGACCTCTCGTATCCCTGACCTATCAGAACCCAGGTGGACAGGTTGACACAGGACTGTCAGTCTCTGTCCTGAGGTGGAGGAACGGGGAATGTGTCAGATACCTGGGTGGTGTTCATTAGGACACAACTGTAGCAAAACATTCTGCAATGGAAAACAATGTGTTCTTATGAGATGACTTCAGGTACTGCTCCCTTGTTTTCCCCCAATTGAACAGGCCCCTCTTGTCTACAGTGGGACAGAAGGTACAAAGTTGACTATTTTTTACTGAATATATAGATTGAACGAACTGAATTGATTTAAAGCTCAATCCAATCTTGTGTGTAAAATAGTGGCAGTCATTTAAAATATTCTGTATTAATCTGGAGGAATTTGCTTCATTCATGAATCTCACCACATACCGTTGAATCTCAGATATTTTATTAAATGATGAAATAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1290 lncRNA upstream 18419 2193354 ~ 2193717 (+) True G1013
TU1285 lncRNA upstream 33096 2178498 ~ 2179040 (+) True G1008
TU1245 lncRNA upstream 45318 2166235 ~ 2166818 (+) True G996
TU1234 lncRNA upstream 70069 2141835 ~ 2142067 (+) True G985
TU1232 lncRNA upstream 71640 2140290 ~ 2140496 (+) True G983
TU1267 lncRNA downstream 558 2258883 ~ 2263565 (+) False G998
TU1268 lncRNA downstream 558 2258883 ~ 2305334 (+) True G998
TU1356 lncRNA downstream 54828 2313153 ~ 2313914 (+) True G1069
TU1375 lncRNA downstream 78120 2336445 ~ 2338735 (+) True G1083
TU1379 lncRNA downstream 81115 2339440 ~ 2340422 (+) True G1085
XM_036979903.1 mRNA upstream 19241 2176672 ~ 2192895 (+) True dpt
XM_036941267.1 mRNA upstream 113452 1984326 ~ 2098684 (+) False nme7
XM_036940834.1 mRNA upstream 113458 1984326 ~ 2098678 (+) False nme7
XM_021615461.2 mRNA downstream 280009 2538334 ~ 2580308 (+) True LOC110531937
XM_036989274.1 mRNA downstream 1141101 3399426 ~ 3400148 (+) True LOC118966170
XM_036981292.1 mRNA downstream 1344338 3602663 ~ 3624582 (+) True bcl6aa
XR_005052490.1 mRNA downstream 1564811 3823136 ~ 3825865 (+) False LOC118965227
trnap-cgg mRNA downstream 1589298 3847623 ~ 3847694 (+) True trnap-cgg
TU1201 other upstream 132533 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 132533 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 132533 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1201929 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1202983 1003783 ~ 1009153 (+) False G583
TU1265 other downstream 558 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 558 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 386010 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 956372 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1244944 3503269 ~ 3503581 (+) True G2464

Expression Profile