RNA id: XM_036981292.1


Basic Information

Item Value
RNA id XM_036981292.1
length 3365
RNA type mRNA
GC content 0.50
exon number 9
gene id bcl6aa
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3602663 ~ 3624582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTCGGAAAGTGGTATCGCCACAAGCTCAAATTCTGAGAATTGAGCTCCTCTGATTCTTAGAACTGGGGTTCTTAGAAGTGGTGATGCAAGAAGTTTCTAGGAAAGCAATATCAGAGCTCGACAAGATGGCTTGCGCAGCAGACAGCTGTATCCAATTCACGCGTCACGCCAGCGACGTGCTGCTGAACCTCAACCGGCTGCGGAGCCGGGACATCCTCACAGATGTCACCATCCTGGTCAACAGACAGCAGTTCCGCGCTCACAAGACTGTCCTCATGGCCTGCAGtgggttgttctacACTATATTTACGGACTCTCTGAAGTGTAACCTGAATGCCATCAGTCTGGACCCCAAGGTGGACCCCGAGGGGTTTGCCATCCTCCTGGAGTTCATGTACACCTCTAGACTGACGCTGAAGGAGAGTCTGATCATGGCGATCATGAACACAGCCATCTACCTACAGATGGATCACGTTGTGGACACCTGCCACAGATTCATCAAATCCAGCGACCCTGGCCAGGCCAACAAGCTGCCCAGAGATGAGTTCTTGGTCAGCCCCTTGCTTTTACCTCAGGGCGTCCATGCATACCGGCCCCACGATGTGGTCGACAACCTGCCCGGCCGGGTCGGCCCCTTCAGAGACGGGAGGCCCTACGCCTCCAGCATGTTCAACGGGGTCAATTCCCCCAGCAACTACCACCTCTACGGTCAGTTCCCCGTCCAGGggttccctttccctctctgcaAGCTGACAGACGCCAAAAACACATTCGCTGACTTCTCTAAAGGCGGGATCCACCACAAGCACTGTTCCCCCCCGGACACGGGCAGCGCCATGAGGGTTGATTACAGCCGAGCGGTGAGCGGGGGCTCGGCCAGCATCCACCATACAGCTAGCTACGTCTCctccagggaggaggagatgaggaaggaGAGCCATGAGGGAGGGGTCAGCCAGACTGGTGGGGTGGGAGGCTCCAGGAAGAGAGGGTTCGTCGCGGCGGCCCACGAGCAGCAGAAGGTGGTTCTGGGTAAGGAGCACGGTCCTCAGACGACAGAGGAAGACATGAGCCAGCAGCACTACCCTCTGGGGATCTCCTCAGCTGGACGGAAAGGCTTGATGAGTAGCCCTCAGAGCCCGCTCAAATCGGACTGCCAGCCTAACTCCCCCACCGAGTCCAGCAGCAGTAAGAACGCAGGTCTCTCCCTGGCCGGCCGGTGTGGTGCCCTGCCCCTACAGGGCAGCCAGGATCCCAAGGCACGCAACTGGAAGAAATACAAGTTTATCGTGCTCAATCAGAGAGCCACCAAGGAGGAGGATGTTGGGCCGCAGGAGCCGGTGGTCTGCTCCCCCCAGCGCCTGGGTCTgcccccctacctccacccctcaGACTCAGAGCACCTGGACCCGCAGGCCAACACCAAGATCAGTGAGCACGGAGAGGACCTGCCGGTCCCACAGGCCTCCCGACTCCACAACATCAACAGAGCTCTGGAGGGATCACAGAGGAGCGCTGACAGCCACTCCTCTGTCTACATCAGCCACTTAAAGTGTACCTCCTGTGGTGCCCCGCCCCCACAGCACTCTGAAGTGTGTCCCAACACCCCGGCTTCCTGTTTAGCGGAGGACATGATGTCAGAGTTACACTCGGAGTACTCCGACTCCAGCTGTGAAAATGGTGCGTTCTTTTGTAACGAATGTGACTCCAAGTTTGCGGAAGACGAAACCCTGAAGCGCCACGTGCTGCAGGCCCACAGTGACAAGCCATACAAGTGCGACCGTTGTCAGGCTGCTTTTCGCTACAAAGGAAACCTCGCCAGCCACAAGACTGTCCACACAGGAGAGAAGCCGTATCGCTGCAACGTCTGTGGCGCTCAGTTCAACAGACCAGCTAACCTCAAGACCCACACTCGTATCCACTCAGGAGAAAAGCCGTACAAATGCGAGACGTGCGGAGCCCGGTTCGTGCAGGTTGCCCATCTCCGTGCCCATGTGCTGATCCACACCGGGGAGAAGCCATACCCGTGCGAGATCTGCGGAACGCGTTTCCGTCACCTGCAGACACTGAAGAGTCACCtgcgcatacacacaggagaaaagccctaTCATtgtGAGAAATGCAACTTGCACTTTCGCCACAAGAGTCAGCTTCGATTGCACCTCAGACAGAAACACGGAGCGATTACCAACACCAAGATCCAGTACCGCACGTCCACCACAGAGCTGCCAACAGACCCGACCAAGGCGTGCTGAACTCGAGCAGGCAGATAGTCTAACAGACGGGCCAATCTTGACCACGGCATTCAatgacccccccctcccccaccaacGCGTACAATCATCCCAAAAATTGTAGTGCCACACTGTGTCGATCAGGTGATGGTCCAGTAACATGGCAGTGTGTGTGCCATTCGAACCGGGTTTCCTCTAACATGTGAACGTAGTACcatctacggtatcttagtcaatTTGATTGTTTCTATATAAAAACGTATAGATATAATTGTGCTGggagtgttgtttttttttatatataagcTTTGAAGGGTCTATTAAAAAGCTTTATTTTGTTGAGAGAAAGGATGGAGTGTTACATAATAAATCCAGTTAGAGGATACAGTATTTTATATTAAATCACTTTTTCTGAAAAGTCTTGACATTTTCGATTGGATGGGTGGTAGTATATTTTTAAGGTAAATGGTATTTCTGGCTGTAATAAAGATTTCACAATTTTTTCTATACATTTTTCTAATTTAGATGTACATGTTAGTCCATGTATATTTGACCCTTTTCatgtcacaacaacaacaaaaaacaattcTGAACTCAAGAAGGACTGGTGATCTAAGTGGACAGAATGACGCATAACGACGCAGTTCCTACTCTTACCAATAGTTACCAATCAATGAAGTGGGGAACTGCAAACATAAGCATTGTGACATACTGTGTAATAAATTTGAACTATAGCCACTGGGTTGCCCTCTGCTGGCAGAGTCAATCTAGaattaaaatgttaaaaaaaacatgcattttcgAAGGTACTGCTTTGAGTGTGGACCAAGAAGATATTTTTTTGcttcaaaatgtatttgtatagatctgatgtgtgtgtgtttttgttgttgtttttttgtttaagTGAACGTTCCCAGTCGTCGTTGTACTAGAAGCTACAGTAAAACAGGTGTATCAGATGTTGTTTGTACATACACTGTGTACTGAAGGTGCCTTCTCTATGGTGACTGAATTCATTTCTATTCAGCCCAGTTCTGTTTATGAAAAGGTACAACTCAAGGACAACACTAGTCCTAGTtttttagtttgtgtgtgtgtttaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K15618 BCL6; B-cell lymphoma 6 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3222 lncRNA upstream 54724 3547343 ~ 3547939 (+) True G2481
TU3174 lncRNA upstream 74002 3437268 ~ 3528661 (+) True G2440
TU3194 lncRNA upstream 125316 3476409 ~ 3477347 (+) True G2459
TU3181 lncRNA upstream 148525 3452983 ~ 3454138 (+) True G2446
TU3125 lncRNA upstream 242599 3357806 ~ 3360064 (+) True G2401
TU3256 lncRNA downstream 7756 3632338 ~ 3640955 (+) True G2514
TU3266 lncRNA downstream 9999 3634581 ~ 3636505 (+) False G2524
TU3267 lncRNA downstream 10505 3635087 ~ 3636505 (+) True G2524
TU3269 lncRNA downstream 12086 3636668 ~ 3637054 (+) True G2525
TU3153 lncRNA downstream 25534 3650116 ~ 3669755 (+) False G2426
XM_036989274.1 mRNA upstream 202515 3399426 ~ 3400148 (+) True LOC118966170
XM_021615461.2 mRNA upstream 1022355 2538334 ~ 2580308 (+) True LOC110531937
XR_005052094.1 mRNA upstream 1344338 2212136 ~ 2258325 (+) False zbtb11
XR_005052490.1 mRNA downstream 198554 3823136 ~ 3825865 (+) False LOC118965227
trnap-cgg mRNA downstream 223041 3847623 ~ 3847694 (+) True trnap-cgg
trnap-ugg mRNA downstream 223306 3847888 ~ 3847959 (+) True trnap-ugg
XM_021616297.2 mRNA downstream 223935 3848517 ~ 3853009 (+) True im:7152348
XM_036983882.1 mRNA downstream 1324145 4948727 ~ 4957086 (+) False agxta
TU3203 other upstream 99082 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 386429 3214697 ~ 3216234 (+) True G2343
TU2640 other upstream 957494 2644335 ~ 2645169 (+) True G2016
TU1265 other upstream 1339098 2258883 ~ 2263565 (+) False G998
TU1266 other upstream 1339098 2258883 ~ 2263565 (+) False G998
TU4120 other downstream 550741 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 774322 4398904 ~ 4399444 (+) True G3234
TU4331 other downstream 815384 4439966 ~ 4441908 (+) True G3351
TU4683 other downstream 1229939 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 1231943 4856525 ~ 4857065 (+) True G3597

Expression Profile