RNA id: XM_036984422.1


Basic Information

Item Value
RNA id XM_036984422.1
length 5627
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110526525
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5664171 ~ 5767693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actattCTCCCTTGTTCTTGCACACCGTTTCTTCATTCCAATGCACACACAGAGCGGAGCATAAACTTTCCGTAACCACGCCGATAATTCGCTCAGGGACTTACTACAATAGATAAACCAAGCGGATTGTATCGGGAATAAGACTTGATCATGTATGTACGTAATTGTGAAAATGCATAGTTGGACTATGCTACATTATGGTATTTGATACAAGAAGTGTGAAGATATCAAACGTATTGACTACAGAAAAGACTTGGGATTTTTTCCCGACAGACCCTGTGAGACGGACATTTACTTCCCTCGGTGTCGATTATATGAAATATTAACGGGGATATTTACCGAACCGTTGTTGGGAGCAGGGCAACTTCTCTTTGGTCGTTTGCCAAATGCGTCTACGGGTTGGACAACTACGGAATCTCGTTTCTCTGGCATAAAACCCACTCGAAATCATTGAGTAAGGAGAGGACACAAATCTTCTCGTACCTTGCTCATATTCCTATTTCCCTCGTTGGTTTTatggaggtaactctgggtttggGTGCTTGACGCCGTTGGACTGGGTGCTTGACGCGGTTGGACTGGGTGCCGGAACACCTCGGATTGTATTcacccgtctctccctctctcccctggggTTATTTTTATGTCCGAGCTGACCGCTTTATGACAATGGATTACTTGCTGGTTTTATGCAGCCTCTGGTTGCACATGGCCTCAGCTGTTGAAGAAACATTAATGGACACCAAGTGGGCCACAACTGAGCTAGCATGGACCGCTCACCCTGAAACTGGGTGGGAGGAGGTGAGTGGCTACGATGACGCCATGAACCCCATCCGGACGTACCAGGTGTGCAACGTGCGCGAGGCCAACCAGAACAACTGGCTACGCAGTGACTTCATCCCACGCAAAGACGTCCTCAGAGTCTACGTGGAGATGAAGTTCACTGTGCGCGACTGCAACAGCATCCCCAACATCCCCGGCTCCTGCAAGGAGACCTTTAACCTCTTCTACTACGAGTCCGACTCAGACTCGGCCACGGAGACGAGTCCATTCTGGATGGAAAATCCCTATGTGAAGGTGGACACCATCGCGCCCGATGAGAGTTTCTCCATGTTGGAGTCGGGAAGGGTGAACACGAAAGTACGGAGCTTCGGACCTCTTTCCAAGACTGGGTTTTACCTGGCATTCCAAGATCTGGGGGCTTGTATGTCGTTGATTTCTGTCCGGGTCTTCTATAAGAAGTGTTCGACCACCATCGCGAACTTTGCCGTGTTCCCCGAGACGGCCACGGGGGCAGAGGCCACGTCGTTGGTCATCGCGCCCGGAACATGCGTTCCCAACGCACTTGAGGTGTCCGTGCCTCTCAAGCTGTACTGCAATGGGGATGGCGAATGGATGGTTCCCGTGGGATCGTGCACCTGCGCGTCCGGGTTCGAGCCCGCCATGAAGGACACCCAGTGTCAGGGTGAGTGTGACATCAAGGACACTCAATGTCAGGcttgcAGCCCGGGCACGTTCAAATCCAAGCAGGGCGAGGGTTTCTGCACACCCTGCCCACCCAACAGCCGTACCAGCTCTGGCGCAGCCAACGTATGCTCCTGTAGAAACGGCTTCTACCGCTCAGACACAGACTCACCAGACAACGCCTGCACCACCGTTCCCTCGGCCCCGCGCAACGTCATCTCCAACGTCAACGAGACCTACCTGGTCCTGGAGTGGAGCGAGCCTCGTGACTCGGGCGGTCGCGACGACATCTTTTACAACGTCATCTGCAAGAAGTGCCTGCCCGAGCGCGGCATGTGCTCGCGCTGCGACGACAATGTAGACATCTCGCCGCGCCACCTGGGCCTGACGCAGCGGCGCGTGGCGGTCCGAAACCTGCAGGCCCACACCCAGTACAGCTTCGAGATCCAGGCCGTCAACGGGGTGTCTAATAAGAACCCGTACACGCCGCAGTTCTCCGCCGTCAACATCACCACCAACCAAGCCGCTCCATCTGCAGTACCTACAGTTCACCTGATGGGGGCCACAGCTAGCACCATGAGTCTTTCCTGGCTGCCCCCTGAAAAACCCAACGGGATCATTCTGGATTATGAGATTAAGTACCATGAGAAGGACCAGGGAGAAGCTATTGCCCACACCATGACCGCCCAAAGGAGTTCTGCCCGCATCGAGGGGCTGAAGGCCGGCACGCCATACGTGGTCCAGGTCCGGGCCCGCACGGTGGCCGGGTACGGTCGCTACAGCAGCCCCGCCGACTTCAGCACCAACCTGCAAAGTGACCCAGAGAAGTCTCTTCAGGAGCAGCTGCCCCTCATCGTGGGTTCAGCCACTGCGGGTCTAGTCTTCATCATAGCTGTCGTTGTCATCGCCATCGTCTGCCTCAGaagacacacagggacACTCGGGACTGGCGTGCCACCTATGAGGAAGCAGAGGAATGGCTCTGAGTCAGAGTACACAGAGAAACTTCAGCAGTACATCACGCCGGGAATGAAGGTCTATATCGACCCCTTCACCTACGAGGACCCCAACGAGGCCGTCCGAGAGTTTGCGAAGGAGATCGACATCTCCTGCGTGAAGATCGAGGAGGTCATCGGCGCAGGTAACCAACCAAAGCTCCTGAGCTACAGGGGGAAGACTGCTAGTCACCTCCAGGCCATACCGTTAGAGGACTTCACGCCAAGCGGAGAGTTTGGGGAGGTGTGTCGTGGGCGTCTGAAGCTGCCCGGACGACGGGAGATCATTGTGGCTATCAAGACACTCAAGGTGGGCTACACCGACAGGCAGAGGCGGGACTTCCTGAGCGAAGCGAGCATCATGGGACAGTTTGACCACCCGAACATAATCCGGTTGGAGGGCGTGGTCACCAAGAGCCGACCAGTCATGATCGTCACAGAGTTTATGGAGAACGGAGCGCTGGACTCTTTCTTAAGGCTCAATGACGGGCAGTTCACAGTGATCCAGCTGGTGGGCATGTTGCGTGGCATCGCCGCGGGCATGAAGTATCTTTCTGATATGAACTACGTTCACCGGGACCTGGCAGCTCGCAACATTCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCCGACTTCGGCCTGTCGCGATTCCTTGAAGACGACGCCACGGACCCAACCTATACCAGCTCACTGGGAGGCAAGATTCCGATTCGCTGGACGGCTCCCGAGGCCATTGCCTACAGGAAGTTCACCTCGGCCAGTGACGTGTGGAGCTATGGCATCGTCATGTGGGAAGTGATGTCGTACGGAGAGCGGCCATATTGGGACATGAGCAACCAGGACGTTATAAACGCAGTGGAGCAGGACTACCGGCTGCCCCCGCCCATGGACTGCCCAACGGCACTGCACCAGCTCATGCTTGACTGCTGGGTCAAGGAAAGAAACCTCCGGCCTAAGTTCTCCCAGATCGTCGCAACACTGGACAAGCTCATCCGCAACGCCGCCAGCCTCAAGGTGGTCACCAGCAGCACGCACTCTTCCGGGGCGTCGCAGCCCCTGCTCGACCGATGCGTCCCCGACTACACCACCTTCACCACCGTGGGAGACTGGCTGGACGCCATCAAGATGAGCCGCTACGGTGACAATTTCCTCAACGCCGGATTTGcctccttcgacctcgtggcccAAATGACAGCAGAAGATCTTCTTCGGATAGGAGTGACATTGGCAGGCCACCAGAAGAAGATTCTAGGCAGCATTCAGGACATGAGACTACAGATGAACCAAACACTGCCTGTCCAGGTCTGAGATGGACCAaccagagagacaggacaggaaggagagggaactgtgccagagagagagagagagagagagagagagagagagagagagagagagcgagccaatGGGAAACCCTAGCTGCCTGACCATCTCAGCCAATCAGATGAAGACAAACCTGGCTTGCAGTGCCTCGAAGGGACTAGAcgttgtttcttcttcttctgtcttcCGCGCCAACGTTTCCTGTTGTGTTCTATGTTATTAGTCCCACGTTTCGACAAGATTTAGCTGAATGatttttgtataaaaaaaaaaaaaatgtttctaaaGAGAAGAAAGGGAACCCATAATCCCATGCGTGCCTCACTTGGTCCAGTGTGGGGTGATCGTTTGCATGCGCGCGTGTGTTTTCGTGAGGATGGCTGGGACTCAACCCCTCCACCCAACCCATCTCCTTGTATCCTGAACTTGGTCATCCTCCTGTGAAAACCCATCTCCTTGAACCTTGAACCTTGACCCTAACATCTGTCGGACAGCCCCCCTGACGGACATTAAAGTTGGAAGTGGACGAACACTGTTTGAgtataaaaatacagaaaaaaaagctgaaaaaGTGAACAAGCGTtcgcacacaaaaaaaatgaagtGTTTGGACACGATAGATGAAGTCCCTCCCATGCTACAActtgttttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattcccCATCTTCATATTGAAGGTGTACTATTATGCACAAGGCCACTGAGAAGGATGTGGAGGAGAAGTGTAAAGGGTGAAAAATAAGAAGATCACCAGAGGTCAAATGAGAGCATCTGAGATGGCCGCGCTAGTTTGGCCCCAAAAGTCTCCGACCGACCTCTTTCTAAGACGTAGGGGAGAACATTGGCTCATATGCCTCATCAACTGTGTCTGTCCTACTATGATAAATGTTGTCTATTTGTTTTTATCAGCTCTCCATTTACATTTTCTGTTCTATAGTTATTGGGGTTTGTGTTTCAAGATAGTACTTCCTGTTTGGGCTGGTCAGAGTTTAGTACTTCCTGTTTGGGCTGGTCAGAGTTTAGTACTTCCTGTTGGCTGGTCAGAGTTTAGTACTTCCTGTTGGCTGGTCAGAGTTTAGTACTTCCTGTTGGACACTTTGATGTCGGGGAGCTAGGCGAGGACTGTGGCAACATACCTGACCGACCggccttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgaatgCGAGAGTGTAACAAGTTACACACACATAATGTACAATGCAGCTTCAGCTATATCCCCACTGTGGAGAATTAGCGCATGAACTGAACAGTGACAAGGAGCAACAATTATATATCGGAAACAGTTACGCTTTACTCTGTGGAAGAACtgttaatgtttttatttttattttattgaaataCAAAATGTTTGGAAATATACACTATATGCATCCACAATAGAGCAGACACACGTAACTTTCTTTTTGCATTTTATCTGGATGTTAAATTAATCCAAAAAACTCGAGTTAAATTTCTCTACTTCCACCCACTGTATTTATTTCTCTCCCCACTTGGACAACAGGCCATTTGAACTGTGGACTTTATTCAAAAGAATGATGAAGAGGAAACAGAAGTTCCAAGAGGATTCAGTAAATGAATtaatgattataaaaaaaaaaaaaatgcatataaAATTGGAtattgtatttttgttgttgttctaaaCAGCCTGTACATGTTTTGTAACAAAAATAAGATAAATAACATGAAAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5695 lncRNA upstream 6091 5657440 ~ 5658080 (+) True G4395
TU5659 lncRNA upstream 27430 5635334 ~ 5636741 (+) True G4378
TU5652 lncRNA upstream 33918 5629938 ~ 5630253 (+) True G4373
TU5597 lncRNA upstream 84387 5579364 ~ 5579784 (+) True G4330
TU5593 lncRNA upstream 92947 5570716 ~ 5571224 (+) True G4326
TU5782 lncRNA downstream 6602 5774295 ~ 5774817 (+) True G4459
TU5809 lncRNA downstream 44257 5811950 ~ 5812165 (+) True G4484
TU5810 lncRNA downstream 47210 5814903 ~ 5815131 (+) True G4485
TU5929 lncRNA downstream 98664 5866357 ~ 5866573 (+) True G4596
TU5948 lncRNA downstream 120669 5888362 ~ 5888781 (+) True G4612
XM_036983882.1 mRNA upstream 707085 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 707085 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1811162 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1816212 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1816477 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052837.1 mRNA downstream 791374 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 791375 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 791375 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 791376 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 916406 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 807106 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 807923 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1222263 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 1264727 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1486098 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 749789 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1043301 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1957353 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2117698 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2268924 8036617 ~ 8037154 (+) True G6807

Expression Profile