RNA id: XM_021609413.2


Basic Information

Item Value
RNA id XM_021609413.2
length 2896
RNA type mRNA
GC content 0.47
exon number 2
gene id b3gnt7
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6684099 ~ 6700304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCGCCTCGGTCATGCTTTTAAAGATGCAGAGCTGTCGAGAGTAACCACTTGATGGCATTGATCCCAACGTACGCTTCAGAGAAATACGCGACCGGAGGCAAAGTAACGTTCTCTGGTTTCTTTGTTCACTTCCAAAAAAAGAGAATGGACTATTTCTTGGCATCCATTTGAAAGGACCGTACGCAAGCAAGCCATCCCTTTTAAGGCACAGTAAGGTGATATTCAGTGACTTTACTTGCACTTGGAATCAGCATTCGAAGAAAATgaTGACCAGTAGGGATAAATGGAGGGTTTACAAGCGGGTatgtgttgtgttctttctggCTGCGGTGACGTTGACGGTGGTCCAGAGAGGGGCTCCCTTCCAAATCGAGAGGCAGGGTCGCATGGAGGCCCCCTCCGAGGGAGGGGAGAACAGGGCCCAGCAGCAGAATACGGGCCTCTACCCAGGGACCAACACCTTCTGGAAGGCTAGCAAGGGCAAACAAGCCGAGTCTACAGCCACCGCCACTGGCACCACGGAGGAGTCCAGCATCACCCAGGAGCGAGCTGGCTCCCGGACCTGGGACGTGTCCAGTGCCAACTGCAGTGCCAACCTCAACTTCACCAACCAGGACTGGTTCAGGGGCTTGGAGGAGAACTTTAAGCAGTTCCTTCTGTACCGCCACTGCCGCTTCTTCCCCATGCTCATCAACCATCCGGAGAAGTGCTCCGGGGAGACCTACCTGCTCATGGTCATCAAGTCCATCGCTACGCAGCACGACCGCCGCGAGGTGATCCGCAAGACGTGGGGCAAGGAGCAGGTTGTTGACGGCAAGAAGGTGAAGACGGTGTTCTTGCTGGGGACGCCGTCCAACGAGGCTGAGAAGGCCAACCATCAGAAGCTCCTGGAGTACGAGGACTACATCTACAGAGATATACTCCAATGGGACTTCCAGGACAGCTTCTTCAACCTGACCCTCAAAGAGACCCACTTCCTTAAGTGGTTCTCCACCTACTGTGCCGACGTGCGCTACGTCTTCAAGGGCGACGACGACGTCTTCGTCAGTGTGGAGAACATCTTCGAGTACCTGGAGGCCAGCGCCCAGGTCAAGAACCTCTTCGTTGGTGACGTGCTCTTCAAGGCCAAGCCCATTCGCAGGAAGGAGAACAAGTACTACATCCCACAACCACTTTACAACAAGACCCACTACCCTCCATACGCCGGAGGCGGTGGGTTCCTCATGGATGCACCCCTGGCCAGGAGGCTCTACTGGGCCTCAGACTCTCTGGAGCTGTACCCCATCGACGATGTGTTCCTGGGCATGTGTCTGGAGGTGCTGCAGGTCACACCCATCAAGCACAATGCTTTTAAGACATTTGGTCTGGTCAAGAACAAGGACAGCAAGCTCAACCAAGAACCTTGTTTCTTTAAGAGCATGATCGTGGTTCACAAGCTGCTACCATCAGAGCTCATACACATGTGGAACCTGGTGAACAGTAATCTCATCTGTTCGCAGAAAGTGGAGATCTTATAGCCTTGGTGGGAACTCTTAACTAGGCGAGGGGAGAAGAGTTGGGATGTGTGTGAGCGGGCCGGGAGGCAGATGTTTTGACATCCAATTCAAGTTCTCCTTTGTTCATAGTAGGACCCAGACAATATTTGATTTATTACATTTCAGCAGACATTCTTATTCAGAGCAATtggggttaaatgccttgctcacatcggcagatttttcacctagtcggcttggggaGTCAAACCAACAACatgttggttactggcccaacgctcttaaccgcagAGGCTACTTGCCTCTACTGCATCACAGTGGACGTAAATTAtctggtgatgttttttttatgttCTGGTGGCGTTTTTAAATGTCAGCAGGCACATTAAGAGATGCCAAACCAAAGGGGTTTGAGGTGCTGGCAGATAGTGTTGCAAAGAGGACAGCGAACTGCCCCACGTTGTCATGCATCCCGTTGACTGTGTACCGAAAGTCAAACGCCTTGTTCATTTGGACCAGGCTTCACCTACACTGTAGTAACATGGACCTTATAAAATAGCAAGAAACAAAgtgtctctctacctcactaATGTAGTTAACATTCTCTTTTCTCGTTTAGGTAGTCATTTGAATATAATTTTGGTCAAGACAAAATGTCTTGTAAGCGTGTTTAACCACGTCAATagtcaaataaataataatgtcatttgtttttcttTACATCAAACCCCGCAGTccaacgtagagagagagagaccctttgtTATGGGTCACTGCACTTCACTAAGATTGTTCAGTTTTCATAAAGAATTTGGACTGTATTACTGTATGTGTCAATGGATTTGAATGTGCTGATATACTTGATATGAATTGAGTTGAGGGTTTATGAGAGGCTCCCGAGTgacgtagcggtctaaggcactgtgtctCAGTGCTAGAGTTGTCACTGCAGACCATGGTTCGATCACGGGCTGTATTGTAACCGGctatcgggagtcccatagggtggcgcgcaattggcccagtgtcatcctggttaggggaggttttggctggggtaggctgtcatttgtttttatctgactttcctagttaaataaaaggtaaaattaCATTGAAACTGTGAAACAAATAAACTACTGCTGATACATATATCGCAATATGTTAATTTAATAGCCCCACAGACAAAGGGGGCAAAAGAGGTTGTTTGATATGAAATTAATTGCAGGGAAGGTATTGGAATTAATGAAAATGTGCAAAGATTATAGTTCCTCATGTTTAGAGGGCAGTGAATATGTGTGGATGATGtatataaatgtttttaaaaaatctaaatatatatatatatatatataggtttaAAAATCACGTttgtaaataaatgtttaaaaaaaataa

Function

GO: NA

KEGG:

id description
K09664 B3GNT7; beta-1,3-N-acetylglucosaminyltransferase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6676 lncRNA upstream 32332 6650165 ~ 6651767 (+) True LOC110527749
TU6710 lncRNA upstream 54320 6626354 ~ 6629779 (+) False G5324
TU6713 lncRNA upstream 54320 6628716 ~ 6629779 (+) True G5324
TU6711 lncRNA upstream 56753 6623804 ~ 6627346 (+) False G5324
TU6712 lncRNA upstream 56753 6623804 ~ 6627346 (+) False G5324
TU6757 lncRNA downstream 42167 6742471 ~ 6747632 (+) True G5365
TU6760 lncRNA downstream 48023 6748327 ~ 6748866 (+) True G5366
TU6979 lncRNA downstream 92452 6792756 ~ 6809277 (+) True G5567
TU6992 lncRNA downstream 109740 6810044 ~ 6810274 (+) True G5580
TU6995 lncRNA downstream 112204 6812508 ~ 6812775 (+) True G5583
XR_005052837.1 mRNA upstream 32304 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA upstream 32304 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA upstream 32304 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA upstream 32304 6559069 ~ 6651795 (+) False LOC110527749
XM_036984615.1 mRNA upstream 916406 5664172 ~ 5767693 (+) False LOC110526525
XM_036985429.1 mRNA downstream 328246 7028550 ~ 7056518 (+) True alpi.1
XM_021610103.2 mRNA downstream 364064 7064368 ~ 7093597 (+) False alpi.2
XM_021610191.2 mRNA downstream 364064 7064368 ~ 7094220 (+) True alpi.2
XM_021610318.2 mRNA downstream 395995 7096299 ~ 7107509 (+) False ankle1
XM_036985646.1 mRNA downstream 395995 7096299 ~ 7107509 (+) False ankle1
TU6645 other upstream 165910 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 1827034 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1827851 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2242191 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2284655 4398904 ~ 4399444 (+) True G3234
TU6993 other downstream 110690 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1024742 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1185087 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1336313 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 1528993 8229297 ~ 8230235 (+) True LOC110501328

Expression Profile