RNA id: XM_021610103.2


Basic Information

Item Value
RNA id XM_021610103.2
length 1794
RNA type mRNA
GC content 0.53
exon number 11
gene id alpi.2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7064368 ~ 7094220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTGCTTCAACCTTCCTAACTTTGTTCAGATGTCCTAATGTCATTACTAAGCACATAGCACACACATCATGGCTAGTCAACATACCCTCATTGGATTAATCCTATTTCTATCGGTGGATTGGACTTCATCTGTCATCCCAGAGAATGAGAAGCATCCCAGCTACTGGAACAACAAGGGGAAGCAGGCCCTCCACAAAGCTCTGGATATGAAGCCAAACGTCCGTCGGGCTAAGAACTCTATTCTGTTCCTGGGAGATGGTATGggcatccccacagtgactgcagcGAGGATCCTCAAAGGGCAGATGAATGGAGGGAACGGAGAGGAGTTTAGTCTGGCAATGGACACCTTCCCACACTTAGCCCTGTCTAAGACGTACAACGTGGACCAGCAGATGCCTGACAGTGCCGGCACGGCCACTGCCTACCTGTGTGGTGTGAAGGCCAACTATGGAACCCTGGGTCTCAGTGCCTCAGCTCTCCGCTACAACTGCAACAGCACCTTCGGAAACGAGGTGGAATCTGTCCTTCACCGCGCCAAGATGGCAGGGAAGTCGGTGGGCATCGTCTCCACCGCCCGTGTGCAGCATGCCTCTCCTGGAGCCGCCTACTCCCACACAGCCAACAGAGGATGGTACGCCGACTCTGACATGAACACTGCAGACATCACAGCAGGATGCCGTGACATCGCCTACCAGCTGGTCCACAACACTGACATCAATGTCATTCTTGGTGGAGGACGAAAATATATGTTTTCCAAGGAAACACCGGACCCAGAGTATCCATCATACAAAGGAGTCCGTAACGACAAGATTGACCTCACCGCAGTGTGGCTCAATAACAAACAGAATGCAAAGTATGTGTGGAACAAAGATGAATTTGACAAAGTGAATCCGGAAAAAACAGACTACCTGATGGGTCTGTTTGAGCCAAGTGACTGCCGCTATGAGCTAGAGCGTGACCATACCTTGGACCCTTCCCTCACTGAGATGGTGGACAAAGCCATCAAGATCCTCCGCAGGAACCCCAAAGGATACTACCTCTTTGTGGAAGGGGGGAGAATTGATCACGGTCACCATGGCAGCGGGGCCAAATTTGCCCTGACGGAGGCGGTGGAGTTTGACAATGCCATCGAGCGGGCGGCAGAACTGACCAGTGAGCTGGACACTCTGTCTGTGGTCACTGCTGACCACTCCCACGTCTTCTCCTTTGGAGGGCACTCCAACAGAGGGAACCCCGTCTTAGGTCTGTCCCGTAACTTGGCTGACGATAAAAAGAGCTTTACCACCACACTCTATGGAAACGGACCAGGATACAAGTTAGTCAATGGATCTCGTGCAGATGTCAACACAACGGAAGCAGATCACAAAGATTACAAGCAGCAGTCAGCCGTGCCTCTGGACTCTGAGACCCACGGCTCAGAGGACGTGGCCATCTTTGCCAAGGGCCCCATGGCTCACCTCTTTCACGGGGTCCAGGAGCAGAGCTACATCGCCCACGTCATGGCCTACGCAGCATGCATTGAGCCCTACACAGACTGCTTCATCCCAGACCTAGAGCCAGAGCCTAGCCACACAGGAGCCACCAACCCCAGCCTCATAGTGCTGCTGATGGGCCTCATacctgccctcctctccctcttcgcTGTCTGATGGGCACTCTTCTCCCTCTGATGGGCCTCATACCTGCCCTCCTCTCCGTTATATCTGTCTGATTTTGGAAACATTTAGAGACCCAGCTATGATTAATCTACTGAGATTTAGCCGATATTCCACCACACagacattttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7244 lncRNA upstream 2194 7058141 ~ 7062174 (+) True G5820
TU7234 lncRNA upstream 50715 7012089 ~ 7013653 (+) True G5815
TU7205 lncRNA upstream 87701 6976249 ~ 6976667 (+) True G5786
TU7199 lncRNA upstream 94494 6969540 ~ 6969874 (+) True G5780
TU7193 lncRNA upstream 97384 6966770 ~ 6966984 (+) True G5774
TU7279 lncRNA downstream 14511 7108108 ~ 7108385 (+) True G5846
TU7280 lncRNA downstream 16131 7109728 ~ 7109940 (+) True G5847
TU7289 lncRNA downstream 17923 7111520 ~ 7192013 (+) False G5849
TU7285 lncRNA downstream 18686 7112283 ~ 7112561 (+) False G5849
TU7286 lncRNA downstream 18686 7112283 ~ 7112561 (+) False G5849
XM_036985429.1 mRNA upstream 7850 7028550 ~ 7056518 (+) True alpi.1
XM_021609413.2 mRNA upstream 364064 6684099 ~ 6700304 (+) True b3gnt7
XR_005052837.1 mRNA upstream 412573 6559067 ~ 6651795 (+) False LOC110527749
XM_021610318.2 mRNA downstream 2702 7096299 ~ 7107509 (+) False ankle1
XM_036985646.1 mRNA downstream 2702 7096299 ~ 7107509 (+) False ankle1
XR_005052898.1 mRNA downstream 2702 7096299 ~ 7107509 (+) True ankle1
XM_036989283.1 mRNA downstream 236855 7330452 ~ 7331042 (+) True LOC118966183
XM_036985694.1 mRNA downstream 321016 7414613 ~ 7550394 (+) True LOC110528450
TU6993 other upstream 252747 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 546179 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 2207303 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 2208120 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2622460 4439966 ~ 4441908 (+) True G3351
TU7952 other downstream 631449 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 791794 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 943020 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 1135700 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 1161545 8255142 ~ 8255878 (+) True LOC110505168

Expression Profile