RNA id: XM_036985694.1


Basic Information

Item Value
RNA id XM_036985694.1
length 2585
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110528450
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7414613 ~ 7550394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGTTCAACAGGCAGAGTTCACTCGACTTCAGAGCAAGTGGACAGTAACTTTTTCCTTTTCTCTTTAACTCCTGAAGTCTCAGCCCTCTTCATTGCTCTGATTGCCCCAATTACTACTCACAGAATGGAATAGGTTAAGAGATCGAGATTAAGGGTCGGTGTCGTAGAGGATCGATCAAACCAGAGCCTTGTTTTCTCTGTGGAGCTGTGGATTGGCATGTCTTCCTTCAGCCGTGACAGTGAAAGTGATCAGTGTTGCTCTACAGAGGACTTGACTGGTGCAGGTGGTCAGCCGGACGGAGCTGAgtctcccgctcagcccagtggAGCTGTCATGCTGCCCAAAGGCGACACGGAATCTCTAGGACTCGTTCGATCGCATGGAGAACAGGGACACATGCCAAGAAATATGCAAGCCCCCCACTATAAAATGATGAACTACTCATATGATGAAGACTTGGATGAGATGTGTCCGGTGTGTGGAGACAAGGTTTCTGGATACCATTACGGGCTCCTCACATGTGAAAGCTGCAAGGGTTTCTTCAAGCGCACGGTTCAGAATAACAAACGGTACACATGCATAGAGAACCAGACATGTGCCATCGACAAGACACAAAGAAAACGCTGCCCTTATTGCCGCTTTCAGAAGTGCCTCACTGTTGGCATGAAGCTGGAAGctgtGAGGGCGGACCGCATGCGCGGCGGCCGCAACAAGTTCGGCCCCATGTACAAGCGCGACCGGGCCCTCAAGCAGCAGAAGAAAGCGCTGATCCGCGCCAACGGCCTGAAGATCGAGTCCATGACCCAGGTGATGCAGGCGGTGCCCACCGACCTCACCATCTCCTCGGCCATCCAGCACATCCACCAGGCCGCCTCCAAGGGCCTGCCGCTCAGCCACCACGGCCTCCCGCACCACGCCGCCCTGCCCCACACAGACTACGATCGCAGCCCCTTCGTGACGTCTCCCATCAGCATGGCCATGCCCCCCCACACTGGTTCCCTCCAGGGCTACCAGGCAGCCTACGGCCACTTCCAGAGCACCCGCACCATCAAGTCCGAGTACCCGGACCCGTACAGCAGCTCGCCCGAGTCCATCATGGGTTACAACCCGTACATGGACGTGTACCAGACGGGCTCGCCGCCCAGCTTCCCACACCTCATCGTGGAGCTGCTGAAGTGCGAACCTGATGAGCCCCAGGTGCAGACCAAGATCCTGGCCTACCTGCAGCAGGAGCAGGCCAGCCGGGGGAAACACGACAAACTCAACACGTTCGGCCTTATGTGCAAGATGGCCGACCAGACGCTTTTCTCCATCGTGGAGTGGGCCCGGAGCAGCATCTTCTTCCGCGAGCTCAAGGTGGACGACCAAATGAAGCTCCTCCAGAACTGTTGGAGCGAGCTCCTCATCCTCGACCACATTTTCCGTCAGGTGATGCACGCCAAAGAGGGCTCCATCCTATTGGTCACCGGGCAACAGGTGGATTATGCTGTAATTGCCTCCCAAGCCGGAGCTTCTCTAAACAACCTGATGAGCCACGCTCAGGAGCTGGTGGGCAAGCTGCGCTCCCTGCAGCTGGACCAGAGGGAGTTCGTCTGCCTCAAGTTCCTTGTTCTGTTCAGCTTGGACGTGAAGAACCTGGAGAACTTCCACCTGGTGGAGAGCGTCCAGGAACAAGTGAACGCGGTGCTGCTGGACTACGTCATGTGCAACTAcccccagcagacagacaggtttggCCAGCTGCTCCTGCGGCTGCCTGAGATCCGGGCCATCAGCCTCCAGGCCGAGGAGTACCTGTACTACAAGCACCTGAACGGAGACGTGCCCTGCAACAACCTGCTCATCGAGATGCTACACGCCAAGAGAGCCTGATGAGACTTCAGATGGGATCCTGATCATTTGGCTGAAACCGACTCAGAACAGACTCTGTTTTGTTGGTTGAGACCCAAGAAACCGACCCAGAACAGACTCCTCCCATGTTAAAGTTAGACTGAGTGATTCTGGGGCAGGAGGCATCCGTTCTTCTCATTTATCGTAACGATCAACCATCCTGGCACTCACACACAGGCAAAAGAACATGCAGAAATGGACACCCACACTTACACATGCTGTGCACACACATACGCGCGCGcatacacacgaacacacacataaaaacacatttaGGCACTCacacgcgcgtgcacacacaaatatacacacattaaggcacacactcacacgttCAAATTCATACAATATgcatatatattacacacacacacacacagatgcttcTGGAGCTCTGGGTAAAGCTTccaaagacagagagaaacagctgAAATTCTTGAGAACTGTCTATTCGTCTCATGGGACATGGACGATACCTTTTGTCTGCTTTGAATAAAAACACAAACCATCAAGGTGATACAAGGACCAACGGACTGTAACTGAAGGAACAAAACCAATGAGTATTGTAAAAACCTCTCCCactgttaacctctctagggtatgtgagACGCTaacgtcccatctggccaacatcctgtGAGGTTGCaaaaaactacaaaaccaacaaaaaaaaaacgacttcctgaatggat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08027 NR5A2, FTF; nuclear receptor subfamily 5 group A member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7408 lncRNA upstream 130019 7283664 ~ 7284594 (+) True G5943
TU7361 lncRNA upstream 220196 7192444 ~ 7194417 (+) True G5904
TU7345 lncRNA upstream 238341 7175802 ~ 7176272 (+) True G5892
TU7331 lncRNA upstream 254342 7159121 ~ 7160271 (+) True G5883
TU7330 lncRNA upstream 256192 7158156 ~ 7158421 (+) True G5882
TU7454 lncRNA downstream 1955 7552349 ~ 7553098 (+) True G5986
TU7938 lncRNA downstream 145886 7696280 ~ 7696531 (+) True G6426
TU7953 lncRNA downstream 168514 7718908 ~ 7720218 (+) True G6435
TU7963 lncRNA downstream 189231 7739625 ~ 7739824 (+) True G6445
TU7966 lncRNA downstream 287033 7837427 ~ 7839951 (+) False LOC110528753
XM_036989283.1 mRNA upstream 83571 7330452 ~ 7331042 (+) True LOC118966183
XM_021610318.2 mRNA upstream 307104 7096299 ~ 7107509 (+) False ankle1
XM_036985646.1 mRNA upstream 307104 7096299 ~ 7107509 (+) False ankle1
XR_005052898.1 mRNA upstream 307104 7096299 ~ 7107509 (+) True ankle1
XM_021610191.2 mRNA upstream 320393 7064368 ~ 7094220 (+) True alpi.2
XM_036985747.1 mRNA downstream 191168 7741562 ~ 7839934 (+) False LOC110528753
XM_036985790.1 mRNA downstream 191168 7741562 ~ 7839934 (+) False LOC110528753
XM_036986015.1 mRNA downstream 290286 7840680 ~ 7882886 (+) False LOC110528839
XM_036986095.1 mRNA downstream 290286 7840680 ~ 7882886 (+) False LOC110528839
XM_036985987.1 mRNA downstream 290287 7840681 ~ 7882886 (+) False LOC110528839
TU6993 other upstream 602992 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 896424 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 2557548 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 2558365 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2972705 4439966 ~ 4441908 (+) True G3351
TU7952 other downstream 174652 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 334997 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 486223 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 678903 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 704748 8255142 ~ 8255878 (+) True LOC110505168

Expression Profile