RNA id: TU7968


Basic Information

Item Value
RNA id TU7968
length 2185
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110528753
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7741562 ~ 7839951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACACGGGGACTCGACTCGGTTAAAGAAATGCACAACTGGAATGTGAAAACACTATTTAATATGTGTAAATGAATGTCACTGATCTGTTTAGTGTAAGAGATTTGTCTGATTTCGAGTCATTTTATTACAGCACGCGTGtggttttttttgtgttttttttgcccAAGTAGACACAAAAAGGAGAAGGGTACCTACAATGTTTTATCTGGGACACTGAAGCACTGAATGTTACTCATCTGTTCAAATGGTGTGGCCTTACgcttgttttctttctttcttttttgtaTGTCAGTGCAATAAGCTGATAGTAAAACTATACCTTAGAGGATTTTTTCCCATGTTTTCGGGTTCAAATGCAACATACGTCTGCATAAAGCTGTACACAAGATTGAGGGCAAAAAAGTCAAATACCTTGCAGCAAGCATACAGCTAGCGTTATCCtcacaaatcatctataagtCCGATATAGTATTCCACAACTACGCCAAGTCTATTTATATCTATGTTTTTTAGCTTATTCCTCCTCTTATagtgttaaaccagactgaacttCCTTAATGCTGTGGGTTCAGAGCAGGTTTGTGAACCAAAAATAAACTCTAATCTATGTTATCTCCTTTCAATTGTCACAAAAATGGACCCAGATTTGGTGAAATATCAGATAGGTCTGTCCGTAATGATTTGGACCATTTGAAAATGCGTTTAGATTTAGTATTACAAATTGTGGCCATAAATCCATTATATAGAACATTGTTTTAAAGGATTGCGATTTAGATTGTGTACTTTGAAAATGGAATGGCTGATAAACAGTAGTTATTGTTAATTCTGTTTCAGTTGATTAGTAGACCTCAAACATTTTCAGAATCCTCTCCTTTTAAAATTCTCAATGTCAAATGACTTATCACACCAGGCTTCGATCACACCGGGCTTCGATCACACCGGGCTTCGATCACACCAGGCTTCGATGACATTAGGATACTGCTTGACACCAGGCTACGGTGACATGAGGATACTGCTTGACACCAGGCTACGGTAACCTTCGGATACTGCTTGACACCAGGCTACGGTAACATTAGGATACTGCTTGACACCAGGCTACGGTGACATTAGGATACTGCTTGACACCAGGCTACGGTGACATTAGGATACTGATTGACACCAGGCTACGGTGACATTAGTATACTGCTTGACACCAGGCTACGGTGACATTAGGATACTGCTTGACACCAGGCTACGGTGACATTAGTATACTGCTTGACACCAGGCTACGGTGACATTAGGATACTGCTTGACACCAGGCTACAGTGACATTGGGATACTGCTTGACACCAGGCTACGGTGACATTAGGATACTGCTTGACACCAGGCTACGGTGACATTAGGATACTGCTTGACACCAGGCTACGGTGACATTAGGATACGGcttatttattattttgcacattcATCATGAATAGAAAAATCCAAATATGtccttttcatttttttaaatttgtggTAGATGCCACACTTCTTCTCTTCGATAAACATACTCTGGTAAGATAAAGTACTTTTGATAAAGTACTTTTTTTAGAGACCCGTGTAGGCAGAATGTGACAGACTTTGTTAGTACATACGGGTAGAGTCTTCAACACTTTCCTTTTCGTCTTTAAAACTACTCGAAAGGAGCCTCCTCGAGCAACAACTTCAACAAAGGAAGGTTGGGGATGAAAATATCTGACGACaaatactatacacacacacattggtgtTTTGGTTTTCACAGGGATATATTTAAGGAATTACCAAAAGACGAGTTGCATATGTCTCTGGAAATGTAACGATTATTATTACCACGTTTTTCTGACGTTCCAGgaacttatttatttatttattatcacGTTTTTATGAAGTTCCAGGAATTCTGTAGAAAGGGATGTTACAGTGGGACCACTGTTGTGGTATTTGACTGTTTAAGGTCAAGATTAATGGCTATGTAATTGTTTAAATGGGTATAAGTGGACATTGTGCAGGGCTGCCGTAAGTTCATCTGTCCATCCCTCCTGACAAAGAACTGCTTCCATGTTGTTTATCAGACGCTGTGCTCTCATTCAACCTACTGCTGAACTTTGTAGGTGGGGGTTTGTTTCTCTTTTGCATTGAATAAAATGAAGCGTGTCCTCAAAGTGTTCGTTCCTCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7963 lncRNA upstream 97603 7739625 ~ 7739824 (+) True G6445
TU7953 lncRNA upstream 117209 7718908 ~ 7720218 (+) True G6435
TU7938 lncRNA upstream 140896 7696280 ~ 7696531 (+) True G6426
TU7454 lncRNA upstream 284329 7552349 ~ 7553098 (+) True G5986
TU7408 lncRNA upstream 552833 7283664 ~ 7284594 (+) True G5943
TU8030 lncRNA downstream 4894 7844845 ~ 7845416 (+) True G6501
TU8053 lncRNA downstream 53804 7893755 ~ 7894244 (+) True G6522
TU8057 lncRNA downstream 57844 7897795 ~ 7898103 (+) True G6526
TU8026 lncRNA downstream 63586 7903537 ~ 7905319 (+) True G6497
TU8394 lncRNA downstream 193533 8033484 ~ 8033732 (+) True G6803
XM_036985694.1 mRNA upstream 287033 7414613 ~ 7550394 (+) True LOC110528450
XM_036989283.1 mRNA upstream 506385 7330452 ~ 7331042 (+) True LOC118966183
XM_021610318.2 mRNA upstream 729918 7096299 ~ 7107509 (+) False ankle1
XM_036986015.1 mRNA downstream 729 7840680 ~ 7882886 (+) False LOC110528839
XM_036986095.1 mRNA downstream 729 7840680 ~ 7882886 (+) False LOC110528839
XM_036985987.1 mRNA downstream 730 7840681 ~ 7882886 (+) False LOC110528839
XM_036986058.1 mRNA downstream 1167 7841118 ~ 7882886 (+) True LOC110528839
XM_021611128.2 mRNA downstream 60810 7900761 ~ 7935216 (+) False LOC110528925
TU7952 other upstream 111818 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1025806 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1319238 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 2980362 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 2981179 4854521 ~ 4856248 (+) True G3596
TU8049 other downstream 45440 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 196666 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 389346 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 415191 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1618997 9458948 ~ 9459953 (+) True LOC118966784

Expression Profile