RNA id: XM_036986235.1


Basic Information

Item Value
RNA id XM_036986235.1
length 2610
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110528925
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7900761 ~ 7935217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGGTACACACCATCTTTAAGGTGTCTAGTTTTGATATATGCATTTGCAATTACTCAACTTTGTTCAGTGTGGTCGTAGAATGTGTAAACATGTTGACGGCAACAATAGTGACCGGCGAGATAACGCAGTGCATCTTGGTATACACACAGTTATACACCTACATAGTTCTTGTTCTACCTAACCTTCCACTCTGTTCTTTCTTTTAGTTTGACTTTGAGTCCAGTTCTGGATATGTTGGATCTAGGTGACTGCCCAGACAAGGCAACATTGCAGTTATCCCTCAAAATGGGAAAGATGCTGTCCTGAGTGAATGTGATAGCGATGGGTCagatatggactatggacaggccATTTGCCAGCCAGGCTGTTGAATGCATATGCTGAACCTATGCAAACAGATCATGACAGGAACAACGTTATCAGTGATGATGACCTACCCCCCTCCATTGTTGGTAATGAAGAGCCAAGGGCCTCTACCCGCCAGAGGGTTCAGCCAGAAGAGCCAAGGGCCTCTACCCGCCAGAGGGTTCAGCCAGAAGAGCCAAGGGCCTCTACCCGCCATAGGGTCCAGTCAGAAGAGCCAAGGGCCTCTACAAGCCATAGGTGTCAGCCAGAAGAGCCAAGGGAAAAGCTGCAGGTGGTCAAAAATAAAGATTGAGCGTTCAAACGATCGAAGAGGCCTGCCACTGATGTGATTCCAAAACACATAGTACACAGCCCAAATGTGCAAACATTTGGCACGAAACCACTGAGCCATGGAAGGAGATCTTTACTGGCTGCTACTGTTGAAGATCAGGCATGATATGACAAAGcttctcactggccaatcagcaCGATGCACTGGTTCCAGAGAAGTCGTCATTGTGACAAACGTACTACCTATGTGTGTGACTGCACATTGAGTGCTTCAAGATATACCATGGGCAGTAGAAAAGGAGATGAGACCGAATGGGGAAAAATAGAAAAGTTgataaaggACTGCGGCTTTGGCATGCAGAAGTACCTGGTGAGACTGCTGACCTATTTACCGGGGACCACCATCGCCAAAGTACCCTGCTCTCCACAGATCCTGTATGAAGCTGGCAAAATGGCCGCCAAGATGGACACAGTCCTGCAGGAAATGGAGCATCCTCAACTCCATGTACTACAGAGGGAGAAGTTCATCTGGAGTCTGTCCAACATCCCTCTGCTGGAGCCGTACCTCCATCTAATGGACGGAGATCCTGTACAGCAGGTGGTCAAGTCAGTCATCCAACTATACAAGACTTGTGTTCAGCCCAAACTCGGCTCCTTCCGCAAGTGCATCAACCATGGTGACTTCAATGACCACAACATCTTGGTGCAACCAGACGATTCAACCGCCTACAAAATCTCTGGCATCCTGGACTTTGGGGACATGAGCAGCGGCTACTACGTGTTCGAGCTGGCCATCACCATCATGTACATGATGATCGAGAACCCCACACCTCTGGATGTGGCAAGAGACGTGCTAGCCGGCTGGGAGAGTGTTATTCCCCTCAACGAAGCCGAGAGGGACGCACTCTACCTGCTGGTGCTCTGTCGCTTCTGCCAGTCCCTGGTTGTTGCCCGCCACACTGTGGTGCAGCACCCGGAGAACAAAGATTACCTCATGATCACCACCAAGACGGGCACCCGCCATCTTTGCCGACTTTGGGAACTGGGCAaggaggtggtggagaggaggtggtTTCAGAATGCCGCCCAGTATCCTGGCAAAGAGTGGCCCAATGGTCCTCAAGCCCAAGAGGTTTAAGGGAAGCAGTCTCTCTTGAAGGATATTTCAGGGACCACTTTCTTTTCATAGGCTGTGTCCCGATTTATTTTCCCTTCAGCCAGTGCTTTCACCAATCCAATGATTTTGAATCCATGCGGAGTCTGCAGGTGCACCTTTTTAAGTATTAAAAGGTACACTCAGCAATATGAAATCATTAAAAAGTGTGGCGTGCCTCAAGCTAATAGTTGGTTGTCATCCTGTTCTGCATGATAATTTCATATTGCTGAGTCTAACCTTTTAGCAGACCGACCATCTGATAAAAGGTAAACTCATTTAAACTTATTAACATAattccatcagtctggcagtgtGACCTGAGGAAAATCTGACCCAAATCCTGTTCTAAAACGGTTTTGAATCTTGGTCAGTCTCAGAtttggccccccccccccccccccccccccccccccctccccccgcacGGAATTTGTGCTCTTTTCAAAACGGCATGTTGACATTGTCATACTGTGGATAATGTCTGTTGGGATGAAGGCCATATGATTATTCAAATGAGTAGGTCGGATGATTTGAGGTGCTTAGTTACTCTGAATCAGCTGTAGCAGTGTCCACAATCCACACTATGTCCTGTGTCAATTTTCATCATTCCATTTTTAGGGCTCACTTCAATTAGTGTAACTCACTTTACAAAATAAGCAATTCAGCAGCTATGACTTACATTTAACTGAAGTGCCCTGTGTAAAGGAGTCATTGATGTACCATGATCGTTTGTTAAAATCATATTTTGTAAGATTCATCTAATTCCGTTGCATAATAAACCTACAAATCTGTGAAattaagaaactttcaaagta

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0047992 hydroxylysine kinase activity molecular_function

KEGG:

id description
K18201 AGPHD1; hydroxylysine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8026 lncRNA upstream 8744 7903537 ~ 7905319 (+) True G6497
TU8057 lncRNA upstream 15960 7897795 ~ 7898103 (+) True G6526
TU8053 lncRNA upstream 19819 7893755 ~ 7894244 (+) True G6522
TU8030 lncRNA upstream 68647 7844845 ~ 7845416 (+) True G6501
TU7968 lncRNA upstream 74112 7837427 ~ 7839951 (+) True LOC110528753
TU8394 lncRNA downstream 98267 8033484 ~ 8033732 (+) True G6803
TU8403 lncRNA downstream 105818 8041035 ~ 8041418 (+) True G6812
TU8421 lncRNA downstream 113800 8049017 ~ 8049287 (+) True nmur1a
TU8437 lncRNA downstream 132718 8067935 ~ 8068262 (+) True G6838
TU8443 lncRNA downstream 141153 8076370 ~ 8076598 (+) True G6844
XM_036986015.1 mRNA upstream 31177 7840680 ~ 7882886 (+) False LOC110528839
XM_036986095.1 mRNA upstream 31177 7840680 ~ 7882886 (+) False LOC110528839
XM_036985987.1 mRNA upstream 31177 7840681 ~ 7882886 (+) False LOC110528839
XM_036986058.1 mRNA upstream 31177 7841118 ~ 7882886 (+) True LOC110528839
XM_036985790.1 mRNA upstream 74129 7741562 ~ 7839934 (+) False LOC110528753
XR_005053652.1 mRNA downstream 17576 7952793 ~ 7952888 (+) True LOC118966768
XM_036986300.1 mRNA downstream 113778 8048995 ~ 8085970 (+) False nmur1a
XM_021611590.2 mRNA downstream 216856 8152073 ~ 8162387 (+) True LOC110529397
XM_036974755.1 mRNA downstream 247020 8182237 ~ 8184031 (+) False LOC100135997
XM_036975274.1 mRNA downstream 247020 8182237 ~ 8184031 (+) False LOC100135997
TU8049 other upstream 28156 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 188454 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1102442 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1395874 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 3056998 4856525 ~ 4857065 (+) True G3597
TU8398 other downstream 101400 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 294080 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 319925 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1523731 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 2048558 9983775 ~ 9984464 (+) False LOC110510920

Expression Profile