RNA id: NM_001124334.1


Basic Information

Item Value
RNA id NM_001124334.1
length 1225
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC100135997
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8117910 ~ 8197019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGACAGACATACGTTTCGAAAAGCTACAGCTAAACTGTCCGTTTTGGAAACCTGCTACTTCCCCTGCTCAGAAGCAATGGATCTTCAGGAATGGGCCAGCATTCTCCAGAACACGATTGAGGAGCATGACATAGAGGACACCTGGAGCATTGAATTTGATAGCGCCATCATTCCTGATCACCCAGCGAGAGGTTGGCAGCAGTACATCAGTGGGGCATTTGCAAGGTTCATGTGCTCAAAGTGTAAGAGGACCTGGCCTTCGAAAAGAGTTCTGGTGGTGTTTCACATGCGTCTGTTGGAGGACAAGGGGATGGTTAAAGTGAAACGCTACAGACAGGAGTGCAAGAAGTGTGTACAGAGTACAATGGAGGAGCCTCATTTTAAGACAGAGAACATTGAGGTTCTGCTGGAGAAGCTTGTTGTGAAGATCCTCGTCAAGTGCTACTATAAGGACGCAGGCGAAAATAATAACCCATTCCATTTGGAAGGGAGGAGTGATGGACCCCATGAGGCTGCCCATTGTGAAGCCTGTAAACATGGCATCTGCAGACAGGTGACCACAAAAGAACAGAATGAAAAATATAGAAACATCTGGGAAATGTTTAACTCCTAAATGTATTGTATAATCAATGAACAATTTTGAGGAGAGTTGGATGTCGAACTGGATATAATACTGTAAAGATAATTGTATTTCCTGATGAAGCTGCGAAAACGATATCCTCTGAATCAaggatggatggggggggggggggggggggagaaggcaTTAACTGAATTGTCCACCATTTCATCCAGACgaaatgtacttgtttttttttatacaaaagtTGATAGTTGATTGAGAAAGTAGTTTCCATTATATGCATTCTTTTGCAATAATCTCTTACACTTTAAAAAGAGTTGAAGGAATTACTTCTCAACAGGTGTACAAATCATATCCCATGTGTCAGGTGATGATGACCTTTATGGTGCAGAGACGACTGTCTACAATGCAAATGCATACAAGCAAGGCAACATTGCTTTAGAAGCACATTTGCATGGATTACAAATATTTGTGGGACTTTACACAGATCTTAGTGTGCAAAACGTGACAACATTTTTAtaatgttcagtgtgtgtgtgtgtgtactttgctTATGACATCAGCAGGGAGTTAAACACCCTTATATGATTTATAACTTTGAGTCAAATGTCCTGACCTGCTATAAAACTGCTTTAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8532 lncRNA upstream 34871 8145046 ~ 8147477 (+) True G6912
TU8412 lncRNA upstream 94603 8086029 ~ 8087745 (+) False G6821
TU8417 lncRNA upstream 94603 8087210 ~ 8087745 (+) True G6821
TU8415 lncRNA upstream 94751 8087210 ~ 8087597 (+) False G6821
TU8443 lncRNA upstream 105750 8076370 ~ 8076598 (+) True G6844
TU8566 lncRNA downstream 25431 8209462 ~ 8225068 (+) True G6946
TU8586 lncRNA downstream 56404 8240435 ~ 8240724 (+) True G6964
TU8589 lncRNA downstream 59252 8243283 ~ 8249184 (+) True G6967
TU8594 lncRNA downstream 68431 8252462 ~ 8252670 (+) True G6969
TU8603 lncRNA downstream 79619 8263650 ~ 8263921 (+) True G6978
XM_021611590.2 mRNA upstream 19961 8152073 ~ 8162387 (+) True LOC110529397
XM_036986300.1 mRNA upstream 96378 8048995 ~ 8085970 (+) False nmur1a
XR_005053652.1 mRNA upstream 229460 7952793 ~ 7952888 (+) True LOC118966768
XM_021611173.2 mRNA upstream 247131 7907266 ~ 7935217 (+) False LOC110528925
XM_021611716.2 mRNA downstream 3898 8187929 ~ 8191228 (+) True LOC110529481
XM_021611929.2 mRNA downstream 8651 8192682 ~ 8199666 (+) True LOC110529566
XM_036989287.1 mRNA downstream 25302 8209333 ~ 8213887 (+) True LOC110497697
XR_005039281.1 mRNA downstream 40334 8224365 ~ 8225267 (+) True LOC118943893
XM_036989290.1 mRNA downstream 45158 8229189 ~ 8231566 (+) False LOC110501328
TU8398 other upstream 145194 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 296441 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 456739 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1370727 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1664159 6517482 ~ 6518189 (+) True G5276
TU8580 other downstream 45266 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 71111 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1274917 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1799744 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1801351 9985382 ~ 9991542 (+) True LOC110510920

Expression Profile