RNA id: XM_021611716.2


Basic Information

Item Value
RNA id XM_021611716.2
length 2113
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110529481
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8187929 ~ 8191228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGTcattcttagctacagtataagtGTGTGTGAAGAAGAAGGATAACAACAACAAGTCAAAGGGTTTGGCTACTTCACCAAAAGAGCAATGACTAACCGAGAATGGATTAGGATTTTTCAATCAAAGGTCAATAATCTGAAGAGGAATAAGAGAGACCGCTGGCGTATCGAGTTTGATGAGTCCATTAAGGCAGACAATGTGCAATTTGGCTGGCATCAGTACATCAGTGGGGCATTTGGAAGGTTCAAGTGCTCCAAGTGTAACAGAAGTTGGTCCTCTGGCCGGGTGAATGTGGTGTTTCACATGCATCTATCGTCAGGGCAGGGAATGGTGAAAGTGCGATGTTTGCGTCAGGAATGCAGGCAATGTGACGGCGCTCTTATGGAGGAGGCCAGTTTCGATGAGGAGAAACTCGAAGTCCTACTGGAGAAACTGATGGAGAAGATTCGTGTCAAGTGCTACCGCGAGAACCTGGGCAAGAGAAACAGACGTGATTTCGATGACGAAGACGATGAAGGTCCCCCCCATGAGAGTGCCCATTGCGAAGCCTGCAGTATGGGCCTTTGCACAAAGCGTTTTAAAGCCCGGTAGAATATGGTAGAAATAGACTGGTATACGCCCTAATACACTTTTTATAATATTTCTCTTTGTTTTActtgtctatatctagtggtcaTTGGGTACACCCTAATGTCTAATTGCTAAAGCTATTTGTTGATTAAATAAATGCAGTGAGACACTGGTGGAACTGGTGGAAGATAGGTGTGGCTGCACAGGGCACAACGAAAGTGGAATAAGAGCCTCAGCAACGTGAgattagagaggtagagaaggttCCTCAGCTATGTGaggttagagaggtagagaaggttCCTCTACTATGTGAGATTAAAGAGGTAGAGAAGGTTCAGAGAAGTAGAGAAGGTTCCTCGGCTATGTGaggttagagaggtagagaaggttCCTCTACTATGTGAgattagagaggtagagaaggttCCTCTACTATGTGAGGTTAGAGAAGTAGAGAAGGTTCCTCAGCTATGTGaggttagagaggtagagaaggttCCTCTACTATGTGAgattagagaggtagagaaggttCCTCTACTATGTGAGGTTAGAGAAGTAGAGAAGGTTCCTCAGCTATGTGAGGTTAGAGAAGTAGAGAATTTTCCTCAGCTATGTGgggttagagaggtagagaaggttCCTCAGCTATGTGgggttagagaggtagagaaggttCCTCTACTTGTGATTCCTTTGAAGAGGAAATGGATTGCCTTTATTTTGCAGCTGTTCCAGTGTGTGTACAAACaatgtgtcacgtcctgaccttagttccttttttatgtctctattttggtttggtcagggcgtgagttgaggggtgggcattctatgtgttttttctatgttttctatttctatgtgtttgacctggtatggttcccaatcagaggcagctgtaaatcgttgtccctgattgagaaccatacttaggtagccttttcccacctgtgttttgtgggtaattattttttccctgtgtgtttgtgtgcacctcgTGTTGTGTCAcggtcttttttttcttttttctgttTACCTGTTTGTTTCTTGGTTGTTTCTGTTTCACTTTCATTAAAAGACGTGGAACTACATGCACACTGCGCCTTGGTTGATTTATGACAGGAAGTTTGACGATAGCCAGCGTGACACAAAGCTTTATTACTGTCATTGAATTATTCTGCTGGTACACCAACAATACTGTTGGGTCTGTGTATTTCCTGTCTTACTCCACAGTGTGTCTATTTGTAGTTGTAATCCAATCTAATGAAGGCGAAACAAGTTTTATTGCACAAGACATTTGTTGATGATGGGGTGTGATATTAGGCGTGAACTACTACAAGACACAACATGTCACTCTTTTGTATTCTTACGTGGAAGTTTATTACCCATAACCAAAATAAATACACCACatatcctcttcctctttcatgATGATGACTTAGCCTTTATGGTAACGGTGACAGGCCTGCACTggccacaacccccccccccccctttgtcaAAGACAATGTAAATAAAATGGCTTTATGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8532 lncRNA upstream 40452 8145046 ~ 8147477 (+) True G6912
TU8412 lncRNA upstream 100184 8086029 ~ 8087745 (+) False G6821
TU8417 lncRNA upstream 100184 8087210 ~ 8087745 (+) True G6821
TU8415 lncRNA upstream 100332 8087210 ~ 8087597 (+) False G6821
TU8443 lncRNA upstream 111331 8076370 ~ 8076598 (+) True G6844
TU8566 lncRNA downstream 18234 8209462 ~ 8225068 (+) True G6946
TU8586 lncRNA downstream 49207 8240435 ~ 8240724 (+) True G6964
TU8589 lncRNA downstream 52055 8243283 ~ 8249184 (+) True G6967
TU8594 lncRNA downstream 61234 8252462 ~ 8252670 (+) True G6969
TU8603 lncRNA downstream 72422 8263650 ~ 8263921 (+) True G6978
XM_036974755.1 mRNA upstream 3898 8182237 ~ 8184031 (+) False LOC100135997
XM_036975274.1 mRNA upstream 3898 8182237 ~ 8184031 (+) False LOC100135997
NM_001124334.1 mRNA upstream 3898 8182348 ~ 8184031 (+) False LOC100135997
XM_021611590.2 mRNA upstream 25542 8152073 ~ 8162387 (+) True LOC110529397
XM_036986300.1 mRNA upstream 101959 8048995 ~ 8085970 (+) False nmur1a
XM_021611929.2 mRNA downstream 1454 8192682 ~ 8199666 (+) True LOC110529566
XM_036989287.1 mRNA downstream 18105 8209333 ~ 8213887 (+) True LOC110497697
XR_005039281.1 mRNA downstream 33137 8224365 ~ 8225267 (+) True LOC118943893
XM_036989290.1 mRNA downstream 37961 8229189 ~ 8231566 (+) False LOC110501328
XM_036989291.1 mRNA downstream 64645 8255873 ~ 8271732 (+) False LOC110505168
TU8398 other upstream 150775 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 302022 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 462320 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1376308 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1669740 6517482 ~ 6518189 (+) True G5276
TU8580 other downstream 38069 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 63914 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1267720 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1792547 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1794154 9985382 ~ 9991542 (+) True LOC110510920

Expression Profile