RNA id: XM_036989291.1


Basic Information

Item Value
RNA id XM_036989291.1
length 1898
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110505168
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8255142 ~ 8271732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGGGCAGAGGCAGGCGATCCAGCCCTGGCGGAGCTGAGGAATCTGGGCAATGAGCTCCAGTCCATCCGCCTCCAGGTGGCCCAGCATGTGGACGGGAACCAGATCTCCCAGGACTGGATGCAGGTGGGCTACATCCTCGACCGGCTGCTGTTTGGCGTCTACTGCATCTTCATCACCTTCAGCTTCCTCGTCATCCTCAGCATCTGGATATATTTATGCCAGTGCGATTTGACCTGTAAAGAGGGTCACAGCGGTCCAACCTACGAGTCGATGCAGACTGTGTTTAACCGCATATCCTTCAGACCGGCAGTCAACCTAAGCAATCCCACCATAGCAAACATCTCCTTCACCCTGTATGCTGTCCTGGGCGTGAATGAGAAGACCCAGATCCTCACTACTTTCCTGTGGTTGAGATTGTACTGGCACCATCAGTTCCTGGTTTGGGACTCTGATGCTTGTGGCGGAGTCACCAGGATTTCTCTGCCAGTCAAAGAGCTCTGGGTGCCTGACATCATCGTGTATGAGTTtgtggACGACGACGTGTCACAGCAATGCCCCTACGTCTACGTCAACCACACAGGCCACATCCGCTGGGACAGGATGCTGCGCCTGGTCAGCGCCTGCAACCTGGAAATCTTCAGCTTCCCCTTCGATGTGCAGAACTGCTCGTTTACCTTCGGCTCCTACATGCACACCAtAAAGGATGTGAGGTTGACTCCAGCCCTGTCCTTCGAGGAGATGTCGGGGAACTCGAAACAGTACCTGGAGGCTAGTGGGGAGTGGGAGCTGGTCAACATCTATGGAGAGGCGTCTGTCCTCAAGTTTGGCATCGACGAATGGGACATCATCACTTTCTggGTGGTGATAAAGCGCAGGCCAGTGCTCTACGTGGTCAACCTGCTCATCCCCAGTTCCTTCCTCATGCTCATCGACATCCTCTCCTTCTACCTGCCCCCTCACAGCGTGGACCGCGCCTCCTTCAAGATGACCCTTATTTTGGGCTACACCGTCTTCCTGCTCATCATGAACGACCTGCTGCCCAGCACGGCCAACGGCACCCCCCTCATAGGAATTTACTTTTCAGTGTGTCTGGCTCTCATGGTCATCAGCCTGTTGGAGACAGTCATCATCACTAATGTGCTCCATTCCAACTCCAAGAAGTACCGCGAGGTGCCCCACTGGGTCCGTGTGGTCATCCTGAAGCACATCGCCCGTATGATCTGCTACCAGTGGCCCGAGGAGCTTGTTCAACCCTCAGCCTCCAGAGGATCCACCCAGGATGACAAGGCAGACAGACCAAACCCCACAAGCCCTCCCTGGGTCCTTGCACCAGCCAACCCTGTGCACATCCCTGCCCAGCACACCACAAGCACCATTGGTCCTGGGGTGGTGTCCTCTGTGCCTGAGCTGCGTCAGATCTGCCAGGACCTGAGTGACTTGCGTGCCCACTTAACGTCGATGCAGAAGGAGGGCGTGCTTCAGGAGCAGTGGTGCCACGTAGGCTACGTACTGGACTTCCTGCTCTTCCGtatctacctcctcctcatctcctgctACGCCATGGTCATCATCTGTATGTGGTGCATCTGGATCAACCAATGAGAGACCAAAAGGGCGCATTTGTTTTAGCTTGCCCATTCCATTGGTCTGAAAGTGAAATCTCAGATCACCTCAGGCAGTGGGGCGAGCTAAAACAAATGCAcccagagagagaagaagggggggTAGAAGAGAGTGAGACCAATGTACAGTAAGTAGTACCATAAGTCTCTGAATTTCTTTTGAAATGTAGTTTTCATTTTGTAAAAAATTgagttaaaggtaaaaaaaaaagtgtgttaactaggcaagtcagttaagaacaaattattatattCAATGACTgccccttgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8594 lncRNA upstream 3203 8252462 ~ 8252670 (+) True G6969
TU8589 lncRNA upstream 6689 8243283 ~ 8249184 (+) True G6967
TU8586 lncRNA upstream 15149 8240435 ~ 8240724 (+) True G6964
TU8566 lncRNA upstream 30805 8209462 ~ 8225068 (+) True G6946
TU8505 lncRNA upstream 58854 8117910 ~ 8197019 (+) True LOC100135997
TU8608 lncRNA downstream 1204 8272936 ~ 8274241 (+) True G6983
TU8610 lncRNA downstream 2934 8274666 ~ 8275427 (+) True G6985
TU8626 lncRNA downstream 34033 8305765 ~ 8306401 (+) True G7001
TU8634 lncRNA downstream 99442 8371174 ~ 8373438 (+) True G7009
TU8695 lncRNA downstream 154501 8426233 ~ 8426444 (+) True G7066
XM_036989290.1 mRNA upstream 24307 8229189 ~ 8231566 (+) False LOC110501328
XR_005039281.1 mRNA upstream 30606 8224365 ~ 8225267 (+) True LOC118943893
XM_036989287.1 mRNA upstream 41986 8209333 ~ 8213887 (+) True LOC110497697
XM_021611929.2 mRNA upstream 56207 8192682 ~ 8199666 (+) True LOC110529566
XM_021611716.2 mRNA upstream 64645 8187929 ~ 8191228 (+) True LOC110529481
XM_036987202.1 mRNA downstream 214922 8486654 ~ 8494344 (+) True LOC110529807
XM_036989292.1 mRNA downstream 330993 8602725 ~ 8612667 (+) False LOC110515166
LOC110532690 mRNA downstream 353154 8624886 ~ 8634174 (+) True LOC110532690
XM_036988195.1 mRNA downstream 395437 8667169 ~ 8674156 (+) False LOC110519734
XM_036988230.1 mRNA downstream 395438 8667170 ~ 8693760 (+) True LOC110519734
TU8580 other upstream 25638 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 218719 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 369966 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 530264 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1444252 6810994 ~ 6811621 (+) True G5581
TU9946 other downstream 1187216 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1712043 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1713650 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1869512 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 3204932 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile