RNA id: XM_036987202.1


Basic Information

Item Value
RNA id XM_036987202.1
length 2443
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110529807
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8486654 ~ 8494344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGAGTGATTTATTTAAGGACTACACCCAAGCGCAACCCGTTGGCTGTGTGGCTTCTCTTCTTCTGTCCAAACCCAGAAGACAGCCGGGACGAGACGGAGCCGGGGAATTGTTGGAGACTTCAAAATCACCGAAAGAAAATACAGCTTATAGAACCGGCACTGTTGCTCTAGAGTACCTGtcacatatatatatttaaaaaaaaatctatatatatttccacatttGAACTAATACGCAAGTATGTCCTGGCAAGGCTACGTGGATAACCTGATGGCCGATGGCAGCTGCCAGGACTCCGCCATTGTTGGTTACACGGACTCCAAATATGTCTGGGCATCGTTTCCCGGTGGTACATTTGTTAACATAACGGTTGAAGAAATCGACATCATCGTAGGAAAGGACCGAGAAGCCTTCTTCTGCGGTGGGCTGACCCTAGGCCAAAAGAAATGCTCCGTCATCAGAGACAGCCTCCACGCCGACGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCCACATATAACGTTTCCATAGGCAAAGCCGGCAAAGCGTTGGTTTTAGTCATGGGAAAGGAAGGTGTCCATGGAGGACAGCTCAACAAGAAAGCGTATACAATGGCCGAGTACCTGAGGAAGTCTGGATACTAAAGGAGCATCGGCCCAGCCACCTAGCAGCTCACCCATAACACACACTTCCAGTTCTAGTTGGTAGTTGCTTACTTTTCTCCCCAGACCCTCCTTTTGTCgtccccccccctttttttggggtggggggggtttgATTCCCCTTTTCTCTTGTTCTTTCCCAGTCATCTTGATGCATTCACACTGTGTACTCAATCCCATTCTAGCACTGTTGCAccatagttaaaaaaaaaaaaaaatgagcaTGTTGTTAACAGGACATTGTGACAAATCTatacttgttaaaaaaaaaaaccgTAAAAAAAAACACCCTTGCACCATTCTGGCCAATgctcagtggggggggggggggggacgaatAAAGTGAAGGAAACCTAAAATTGATGAACTGAGATTTCGTGTGATGGTGCCCCGGAAGTTCTCTTGAGCAGCCGATGCCTTTGGAGCACTTGAGCTGTAACCAAGCTCATTGTCTTCCTTTTCTAGagcatgtttattttttttggggggggcgcaTGCATATCTTTGAGGCTACTGAAATACTGTTgttccctctgtcccctccctgtaACTCCTGCCAAATATCTGTAgctccttccccctcttcctgTTTGTCCATAGGTGACACTACATCAGTACACGGGAGGAACACTCCATTAACCAATCACTACACCCTAAAgtcccctgtatctccctctctgagCCACACTACTCTACCGGATTGGGGGGGGGTTGTGCTTCAATGCAGTCATGGCAGGCTTATCAGTTCTGGTATTGATTGAGTCAGAAGGCAAAACCGACATGGTGGATGCAGGCAGAATCTCTTCCATGTCCTCTTCATGACTACATGAACCCCATTATGGACATTCCATCGTTACAATGGCGTAGACACTTAAAACTGTTTGCCAGCTCCTGTAATGCATTtcctttatttgttttattttttaaaggctGCCATTTTGGACAGTAGATACATCCAGTTTGACATTTTCATAGGACCAATTTTAGTGACAGCTTTGGGTAAATATACAATTGCTCTAAATCATTGAAGGATGCCTTCTATCCTCATCTTTCCCGCTGAAGGCAAAACAACACTAATGTAAAACCACATCTTTCTGTTGAAGGCACAAGGGAGGGAGGGTTTGCGGTGGATGAAATCGAGCGGTCATAATTTGACAACTTCAGATTTTTTATTAAAGAAATGAATTACTGCATTTCTAAACCCATGCTGTGTGAAGAAACGACTGTGGAATAAATGGCCTTGTACTCGTGTTCAACTAAGATATGGTATCAAACTTTCTTTTCAAGCTCTGTACTTAAATGTAATGTCCAATTTGAAaagaactttaaaaaaaaaaataaaaaaaaagaatatatatataaagtagaAATTACACAATTGAAATGGGAGACGGGATTGGTTGGAATAAAAACTCTTTTGATTGTCTTGTGGAAACTTGTATACCAAAGCTGTGTATCCTGTACCATAATGTTGAAACATCAATTTCTATTGTATGATGGATTTTTAACAGCTGCCCAGGAAGGAGTCATTTCAttggcacttttttttttttttttttgcatcagTGCCAATGTTCAGGccttgtggggtgtgtgtgtgtgtgtgtactaattAAAACCTTCATTTGCTGACTTTCCTGACACTTCTTTTCTTACACTTGGGATAGTCTCTTTAACACTTCATATGCCTAAACCAAGAAATGCCATAAATTAATTTATCAccttgtttacagacagatcaaataaataaattccaACCAGA

Function

GO: NA

KEGG:

id description
K05759 PFN; profilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8725 lncRNA upstream 11086 8475364 ~ 8475568 (+) True G7092
TU8724 lncRNA upstream 11573 8474845 ~ 8475081 (+) True G7091
TU8722 lncRNA upstream 17533 8468705 ~ 8469121 (+) True G7089
TU8717 lncRNA upstream 39663 8446355 ~ 8446991 (+) True G7085
TU8711 lncRNA upstream 42613 8443832 ~ 8444041 (+) True G7081
TU8676 lncRNA downstream 1391 8495735 ~ 8495841 (+) True G7047
TU9071 lncRNA downstream 112404 8606748 ~ 8606971 (+) True G7383
TU9075 lncRNA downstream 116158 8610502 ~ 8610850 (+) True G7387
TU9077 lncRNA downstream 117005 8611349 ~ 8611729 (+) True LOC110515166
TU9084 lncRNA downstream 126226 8620570 ~ 8620924 (+) True G7396
XM_036989291.1 mRNA upstream 214922 8255873 ~ 8271732 (+) False LOC110505168
XM_036989290.1 mRNA upstream 255088 8229189 ~ 8231566 (+) False LOC110501328
XR_005039281.1 mRNA upstream 261387 8224365 ~ 8225267 (+) True LOC118943893
XM_036989287.1 mRNA upstream 272767 8209333 ~ 8213887 (+) True LOC110497697
XM_021611929.2 mRNA upstream 286988 8192682 ~ 8199666 (+) True LOC110529566
XM_036989292.1 mRNA downstream 108381 8602725 ~ 8612667 (+) False LOC110515166
LOC110532690 mRNA downstream 130542 8624886 ~ 8634174 (+) True LOC110532690
XM_036988195.1 mRNA downstream 172825 8667169 ~ 8674156 (+) False LOC110519734
XM_036988230.1 mRNA downstream 172826 8667170 ~ 8693760 (+) True LOC110519734
XM_036987965.1 mRNA downstream 227226 8721570 ~ 8747704 (+) False LOC118936489
TU8596 other upstream 230776 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 256419 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 449500 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 600747 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 761045 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 964604 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1489431 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1491038 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1646900 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2982320 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile