RNA id: XM_036989433.1


Basic Information

Item Value
RNA id XM_036989433.1
length 2192
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110531220
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9171968 ~ 9183082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACGACACAGACCTGCAAAAAAAATTAAACAGACACTGAAATAAATACGTTTGTTTGTGTTGCTAACGAACCCTTCTCTACTGCCCACATTCACAATGCTTTATTTGATTCTCTTTGTTGGAACGTTCGTCCTGTCCTCGGGGCAATTCACGACTAGCCCATCGTTTACAACATCAACCACAAGTTCCATAACCTTAACTGCTAACCCGTTGTTGGCACCGTCAACCACAACACCTACAACCACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTACCCCTGGGGATACAACTACTGCCCCATGGGATACAACTACTGCCCCTGAGGAAATAACAACCACAACTGTTATCGCGGATTTTACAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCCGTTCAACCAACAACAATTCCTACAGCAAACCTGACCACGTTTGCACATGCAATGGTGAATTTATCCAGCTACGAAAATCTGGATAGCGATGCAATCGTTTCAAACATTGAGGAGTTCTTGAAGCACATCAGCAATAATGCCCTTGGACCTCTGAAGATAACAGTGAACCGTTTCACAAAATGTAGCGGCGCCCAGTGTGGAGACCAGCAACCCTCTACTACCCCTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCTCTACTACCCCTCAATTCTTCCCTGACACTCAAACCTCCACTGGCCCTCAACCCACATTTACATAGATACCGTTCTGGTTTCATAATCACCACTGATTCATCAGACATCTGTATAGCCTACTTGTTGATTTGTTAACTTGTCAATAATTTGAAATGGAGTGGGGTAAATTGAAATGTAGGTACATAAATATATGTCATACAAGTTCATACTCTAACTTTGAAGGAATAGCTATGGTTTTTAAAAGTCAGTGATATTGGTAACACTTTCCATTGAGGTATCCTTTAAGTGAGTTGTAAAAAGGTATATGAATACTTCAACATCAACCGTACTGACTGGGATTAGGATATGTATTTTACTGTATGACAGGGACTGGTAGATATTGCAATCAACAAGTTTAAATCAATCATGTGGAAATATCTCCATTGACCCTGAACTTGGATGTAGTAATTCAAAGACTTTGGCTTTGTGAAGATTGAAACTGCTTTTTCTATAAAGTATGGCAGACTATTTAgaaatatgttgtttttttttagctAAATATTTTGTAGCTTTTTTATTCTGTTATTTTCATTACTTTTTAAGAtgtattctttgttttcctttGTCAGGTTGGGCCCCTCTCAATCAAACCTGTTCTCAGCCCCATTGTTATTTATtgaagctttatttaactaggcaagtcagttaagcacaaattcttatttacaatgacagcctacccctgccaaatccggacgacactgggccaattgtgcgcagccctatgggactcccaatcccagaCGAATGGGATACAGGCCTGGAATCAAATCAGggtctgcagtgacacctcttgcattgagctgtagtgccttagactgctgcgccactcgggagcccaattgTGGTATGTTAGGTTGTGATCCTCTCAATCAAACCTGTTTTTCAACCCCATTGTGGTATGTTAGATTGGGTCCCTCTCAATCAAACCTGTTTCTAggttcagacaaaacaactttcTTCTTGTGCTCATTTGGAATCATTGATAAAAAATAACATGCCAAATCATCTCTTATGTTGATTATATTGCTAACTGACTTGATTTAAAATTACTTTCAGATGATGTGGGCATGACATGCTGTGTGGTTGATTGacttttttttaatgcatttgttGGCAGTGGCTAGTTTAAAGGGGGCCTGAACATACTGATTTCACCTCGGTCTTCCTCCTCATTAAGTAAAATGCATTTTCATTTTgcgggtgtggtttgatgtgggtgtgttatgttcactatataaaataatataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9495 lncRNA upstream 18125 9153538 ~ 9153843 (+) True G7757
TU9478 lncRNA upstream 41123 9130604 ~ 9130845 (+) True G7740
TU9312 lncRNA upstream 294441 8874781 ~ 8877527 (+) True G7581
TU9300 lncRNA upstream 306791 8864181 ~ 8865177 (+) True G7573
TU9164 lncRNA upstream 340588 8799490 ~ 8831380 (+) True LOC118966103
TU9514 lncRNA downstream 12273 9195355 ~ 9195727 (+) True G7776
TU9523 lncRNA downstream 34137 9217219 ~ 9218494 (+) True G7780
TU9803 lncRNA downstream 48444 9231526 ~ 9231756 (+) True G8000
TU9812 lncRNA downstream 54922 9238004 ~ 9238233 (+) True G8009
TU9835 lncRNA downstream 120010 9303092 ~ 9303588 (+) True G8030
XM_036989225.1 mRNA upstream 256568 8877591 ~ 8915400 (+) False usp13
XM_036989170.1 mRNA upstream 256568 8877593 ~ 8915400 (+) False usp13
XM_036989273.1 mRNA upstream 256568 8878419 ~ 8915400 (+) True usp13
XM_021615003.2 mRNA upstream 300684 8868110 ~ 8871284 (+) True ndufb5
LOC118966103 mRNA upstream 320596 8799458 ~ 8851372 (+) False LOC118966103
XM_021614393.2 mRNA downstream 35576 9218658 ~ 9221408 (+) True LOC110531147
XM_021614129.2 mRNA downstream 57037 9240119 ~ 9300065 (+) False psmd1
XM_021614202.2 mRNA downstream 57037 9240119 ~ 9300065 (+) False psmd1
XM_021614254.2 mRNA downstream 57037 9240119 ~ 9300065 (+) True psmd1
XM_036990199.1 mRNA downstream 245435 9428517 ~ 9436879 (+) False LOC118966743
TU8596 other upstream 916090 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 941733 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1134814 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1286061 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1446359 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 275866 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 800693 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 802300 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 958162 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2293582 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile