RNA id: XM_021614393.2


Basic Information

Item Value
RNA id XM_021614393.2
length 2360
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110531147
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9218658 ~ 9221408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTCCTTAAGCGCTTTGGAAGTTTCTTATGTACACATTTTATGTTTGTGCATGGAGCTCCGAAGTACAATAGTCCGTGTAAATAAAACGTATCTTTTGACGTTTTTTAAACTCTTCGGAGCGTGGTCTGAGCGGTGTGCGTTGTCTTGTAGCTAAAGAGCAAAGAGGGCGATTTACTATGGCTTGTCCGATTTATCCAAAGGACACACCGCAGCCCACAGAGGACATCGAATTTCAGCAAGTACTGCGTCAAATTGGAGGTAAAGAGAATATATACTTAGTAAGTGATACCGTTAAATCGGATGAGGAGGACGAAGCCAGTGGGATATTAAAGGAGTTCATTCAAGACATGTTTCATAGCGGGCGCACTGAAAACCTTGGCACGAGCCATACCAACAACAACACTAACGGTCAGATTTATTCCTCTCCAAATAGTCAAGGGGATACTACAAGCGAAAATATTGGGACATGCGAAACAGTAAACAACTGCAAGACTTTGCCTCAAGCCCAGGGGAACGAAATACCTCTGTCAACGAGGCCAAAGGATTTAGTATTGAGTGCCAAATCTATGGGAGAGGATAAAGGACCACCGAGGCTCAATGGGAACGTCCAAAAGACCAAAACCTCAAGCATGAATAGTTGTAGAGGAAAGCGAATAATAGACTATCCTATTATAATATTCATATTTAGACAGGAGTTTTTCAGTGGCAGTGCAAACGCAATTTGCCTGAAAGAAATTCTGAAGGATGTTAGGTCACGTGCGAAACGTGGCGGTGTCCGCCCAGCACTAGTCGGGTTAATACGCTCAACAGGTGAGAGCAACGAGACGCGTGAATCAGTGGGATTTCTGGAGGGCCTGCTTCGTTCGGTGTTTCGGAAACATCCACCAGAAGCCATCTGGGCAGGGCATTTCATTCCCAAGACAGAGGATAGGATGCTGGCCATCAAGAAATACGCCTGCAAAGCCATCTATTCGGCCCAATCCTCAGATAATTCTGAGGAAAGAGGGAACATGTTTTTAAGGCCATTCCAATGTTTGCCTTGGCCTAGAAGACACAACAGCCAGGCCAACAACACTTCAGCAAACAGGCAAAGAGgTGACGCTGCTAGTGCAGAGGAAGGGATCCCTCTGAAGACGGGTGTTTTGTCCTCTGGACCCCAGGCAGAGTCCGACTGTGGTGTAACCAAAAAGGACAGTCATGATGACACTCGTGGGTCATGATTTCCCATGTCCAACTGTGGACAATACTCAAACGTTGGTCTCAAGGAACATTGGTGTCTGTACAAGTCACATGTCTGGCACATTGGCCTTACAATCGGTCAGAGAAGAGTTGATACATTAGCCTGTGATTATGAACAATTTGAATTTAGCGATAACTCAAGTTACGCAACTTAATACATTTAGTGTACATGCGTATCTTGTGAGGTTACTCTGTTACATAACCATCCATGTATGATGTCACTTTAAATAATTGTCATGTAATATCTGCTTTTGTTGTTACAATGAGCTCATCTTGAATTGTAAAACAACAATGAAAAAATGTGTGACCAACAAACACTATGACCATTTACTTCATTCTGTTCGGTAAGTGTGATGGGATGCTGTTTTCAAACGAAACACAATACCTTGCTCTTGTTAAAGCTTTTAGAattgatttgtttatttgttattttctttTGCTTGACTTCAATTAACATTCAGCAACTAGTGAGTTTTAGTGTTTTTTAAAACAATATAGATTTAATAGGCGCAATGAGAAAGAGTTAGAAACAATTAGAAAGTCCAAAATGTGTGCCTTAGAAATTCAGTCGGCAcaaaaaaaatgttgggtaaaAAAACAACCCAGTCCTGGATATAAAAAACAACCCAGCCCTGGATAAAAAACAAAACCAACCCAGCcctgtgtaaaaaataaaaaacaacccAGCCCTGTgtaaaattttttttaaaaacagccCTGTGTATAAAAAACAACAACCCAGCCATGGATAGAAAACAACAACCCAGCCCTGTGTATAAAAAACAACAACCCAGCCCtgggtaaaaacaacaacaacccaGCCCTGgatataaaaaaacaacaacccagCCCTGGATATAAAAAACAACAACCCAGCCCTGGATATAAAAAACAACAACCCAGCCCTGGGTAAAAAAGCAACAACAACCCAGCCCtgggtaaaaaacaacaacaacccagccctgggtaaaaaaacaacaacaacccagccctgggtaaaaaaaacaacaacaacccagccctgggtaaaaaaaacaaaacaacaacccaGCCCTgggtataaaaaaaacaacaacccagCCCTGGGTATAAAAACAACAACCCAGCCCTggataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9523 lncRNA upstream 164 9217219 ~ 9218494 (+) True G7780
TU9514 lncRNA upstream 22931 9195355 ~ 9195727 (+) True G7776
TU9495 lncRNA upstream 64815 9153538 ~ 9153843 (+) True G7757
TU9478 lncRNA upstream 87813 9130604 ~ 9130845 (+) True G7740
TU9312 lncRNA upstream 341131 8874781 ~ 8877527 (+) True G7581
TU9803 lncRNA downstream 10118 9231526 ~ 9231756 (+) True G8000
TU9812 lncRNA downstream 16596 9238004 ~ 9238233 (+) True G8009
TU9835 lncRNA downstream 81684 9303092 ~ 9303588 (+) True G8030
TU9836 lncRNA downstream 82554 9303962 ~ 9304110 (+) True G8031
TU9838 lncRNA downstream 91007 9312415 ~ 9315424 (+) False G8032
XM_021614466.2 mRNA upstream 35576 9171968 ~ 9183082 (+) False LOC110531220
XM_036989375.1 mRNA upstream 35576 9171968 ~ 9183082 (+) False LOC110531220
XM_036989433.1 mRNA upstream 35576 9171968 ~ 9183082 (+) True LOC110531220
XM_036989225.1 mRNA upstream 303258 8877591 ~ 8915400 (+) False usp13
XM_036989170.1 mRNA upstream 303258 8877593 ~ 8915400 (+) False usp13
XM_021614129.2 mRNA downstream 18711 9240119 ~ 9300065 (+) False psmd1
XM_021614202.2 mRNA downstream 18711 9240119 ~ 9300065 (+) False psmd1
XM_021614254.2 mRNA downstream 18711 9240119 ~ 9300065 (+) True psmd1
XM_036990199.1 mRNA downstream 207109 9428517 ~ 9436879 (+) False LOC118966743
XM_036990336.1 mRNA downstream 207749 9429157 ~ 9431792 (+) False LOC118966743
TU8596 other upstream 962780 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 988423 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1181504 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1332751 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1493049 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 237540 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 762367 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 763974 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 919836 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2255256 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile