RNA id: XM_021614129.2


Basic Information

Item Value
RNA id XM_021614129.2
length 3321
RNA type mRNA
GC content 0.54
exon number 25
gene id psmd1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9240119 ~ 9300065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTAACTATGGGTTTTTGGAAAGGGGGCTTTCATTATTGAACCAAAAATATTTTTCAACAGACAAGTGTCCCGCTGTTGTGGACAACTGACACATCTACTGTACTTTCAAGGTGTTGATGTTTTATAATTTCATTGTCACTAACTGAAACGGTATAACCTGGGTTCGTGGAGTTAAGAGGGGGAGAATAAAGAACCAACCATGATAACGTCTGCCGCTGGAATCATCTCACTGCTGGATGAGGAGGAGCCCCAACTCAAGGAGTTTGCTCTGCACAAGCTGAACTCCATTGTCAATGACTTCTGGGCTGAGATATCGGGATCTGTTGACAAAATCGAGGTCCTGTATGAAGATGAGACATTTCGGAGCAGGGCGTTTGCTGCCTTGGTGGCTTCCAAAGTGTTCTACCACCTCGGGGCGTTTGATGAGTCGTTGAACTACGCTCTGGGTGCAGGAGACCTTTTCAATGTCACAGACGACACTGAATATGTGGAGACCATTATCGCCAAATGCATTGATCACTACACCAAGCAGCGGGTGGAGAACGCCGAGCTTCCTGAGGACGAGGAGAAGAAGAGCATCGACCCCCGGCTGGAGGGCATCGTCAACAAGATGTTCCTGCGTTGCCTGGGCGACCATAAGTACAAGCAGGCCATCGGCATTGCCTTGGAGACTCGACGCCTGGACATCTTCGAGAAGACTATCCTTGAATCGAATGACGTTAGTGGCCTACTGGCCTACAGCCTGAAGGTCTGCATGTCACTAATGCAGAACAAGAAGTTCCGCAACGAGGTCCTCCGAGTGCTGGTCAAGCTCTACATGAATCTGGAGAAGCCTGACTTCATCAACGTTTGCCAGTGCCTGATCTTCCTGGACGACCCACAGGCGGTGAGCGACATCCTGGAGAAGCTGGTGAAGGAAGACAACCTGCTGATGGCCTACCAAATCTGCTTCGACCTGTACGAGAGTGCCAGCCAGCAGTTCCTCTCCTCCGTCATCCAGAACCTGCGCACCGTGGGCACGCCCATCCCTGCCGTGCCTGGCTCCACCAACACAGGCACTGTGCCCATCCCAGACAAAGACAGTGACGCTATGGAGACGGACGACAAGGCCAGCAGCTCCCCTGCAGGAAAAGCTGCAGACAGTAAGGATGAGCCTAAGGACCAGAACGCGAAGATGATCAAAATTCTCAGTGGAGAAATGGCTATCGAATTTCATCTGCAGTTCCTCATCCGgaacaacaacacagacttaATGATTCTCAAGAACACAAAGGATGCAGTCCGAAATTCAGTGTGTCACACAGCCACGGTCATAGCCAACTCCTTCATGCATACGGGGACCACAAGTGACCAGTTCCTCAGAGAGAACTTGGAGTGGCTTGCAAGAGCCACCAACTGGGCCAAGTTCACAGCCACAGCCAGTCTTGGCGTCATTCACAAGGGTCACGAGAAAGAGGCACTGCAGTTGATGGCCACTTATCTGCCCAAAGACACCTCACCCGGATCAGCCTACCAGGAGGGAGGTGGCCTGTATGCCCTCGGGCTAATCCACGCCAACCACGGGGGGGACATCATTGACTACCTGCTCAGTCAGCTCAAGAACGCCAGCAACGACATTGTCCGTCACGGGGGAGGTCTGGGCCTGGGATTGGCTGCTTTGGGTACAGCCAGGCAGGATGTGTACGATCTGCTCAAGTCTAACCTGTACCAGGACGATGCAGTCACAGGCGAGGCAGCAGGACTGGCCCTGGGGCTCGTCATGCTGGGCTCCAAGTCTGCCCAGGCCATCGAGGACATGGTGGGCTACGCCCAGGAGACTCAGCACGAGAAGATCCTGCGCGGCCTGGCCGTGGGCATCGCCATGGTGATGTACGGACGCATGGAGGAGGCAGACACGCTCATCGAGAGCCTCTGCAGGGACAAGGACCCCATCCTGCGCCGCTCCGGAATGTACACAGTGGGCATGGCCTACTGTGGCTCCGGGAACAACAAGGCCATCAGACGCCTGCTGCATGTGGCTGTAAGCGACGTGAACGATGATGTCAGAAGGGCAGCGGTGGAGTCCATTGGATTCATCATGTTCAGgacCCCAGAGCAATGCCCCAGTGTGGTGTCTCTCCTGTCAGAGAGCTACAACCCCCATGTGCGCTGCGGAGCCGCCATGGCCTTGGGCATCTGCTGTGCCGGGACAGGCAACAAGGAGGCCATCAACCTGCTGGAACCTATGACCAACGACCCAGTGAACTACGTGAGACAGGGTGCCCTCATCTCCTCTGCCCTCATCATGATCCAGCAGACCGAGGTCACCTGTCCCAAGGTGAACCAGTTCCGGCAGCTCTACTCCAAGGTCATCAACGACAAGCACGATGACGTCATGGCCAAGTTCGGGGCCATCCTGGCCCAGGGCATCCTGGATGCAGGTGGTCGTAACGTCACCATCTCCCTGCAGTCGAGGACGGGCCACACCCACATGCCGTCAGTGGTGGGCCTGCTGGTGTTCACCCAGTTCTGGTTCTGGTTCcccctctcccacttcctctcccTGGCCTTCACCCCCACCGCCATCATCGGACTCAACAAGGACCTCAAGATGCCCAAGGTGCAGTACCGCTCCAACTGCAAGCCTTCCACCTTCGCCTACCCTCCGGCCCTGGAGGTACccaaggagaaagagaaggagaagGTGTCTACTGCTGTTCTTTCCATCACAGCCAAAGCTaagaagaaggagaaagagaaggagaagaaggagaaagaggaggagaagatggaagtAGTGAGTGAGGTACAGGAGGctgagaaagaaaagaaagatgaggagaaagagaaggagaaggagaaggagaaggagaagaagaaagaacCCGAGCCCAACTTCCAGCTGATGGAGAACCCAGCCAGAGTGATGCCCGCCCAGCTCAAAGTGCTCAACATGCCCGAGACGTGCCGCTACCAGCCCTTCAAACCGCTGCACACCGGCGGCATTATCATCATGAAGGACACcagcgaggaagaggaggagctggTGGAGCCTGTCTCTGCCCACGGCCCCAAGAtcgaggaggaggaacaggagccCGAGGCCCCCGAGTCCTTCGAGTACGTTGACGAATGAACGCTGTCCAAGCAAAAAGGTGACGTTACCAGGCTTCTACAGGAATAATCTTCACATCCCAGCATGCACCTCTTTGTCTACTCCCCCTTACTTATTTTACATGCTCCTTCCCTGTCATGGCCCCCTTTGTCAGACAGGGAATGTTTGACATTCTCTTGTTAAATGGTATCATTTTCTGTCAGTACAATAAAATGAAAAAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9812 lncRNA upstream 1886 9238004 ~ 9238233 (+) True G8009
TU9803 lncRNA upstream 8363 9231526 ~ 9231756 (+) True G8000
TU9523 lncRNA upstream 21625 9217219 ~ 9218494 (+) True G7780
TU9514 lncRNA upstream 44392 9195355 ~ 9195727 (+) True G7776
TU9495 lncRNA upstream 86276 9153538 ~ 9153843 (+) True G7757
TU9835 lncRNA downstream 3027 9303092 ~ 9303588 (+) True G8030
TU9836 lncRNA downstream 3897 9303962 ~ 9304110 (+) True G8031
TU9838 lncRNA downstream 12350 9312415 ~ 9315424 (+) False G8032
TU9839 lncRNA downstream 12350 9312415 ~ 9315424 (+) False G8032
TU9840 lncRNA downstream 12350 9312415 ~ 9315424 (+) True G8032
XM_021614393.2 mRNA upstream 18711 9218658 ~ 9221408 (+) True LOC110531147
XM_021614466.2 mRNA upstream 57037 9171968 ~ 9183082 (+) False LOC110531220
XM_036989375.1 mRNA upstream 57037 9171968 ~ 9183082 (+) False LOC110531220
XM_036989433.1 mRNA upstream 57037 9171968 ~ 9183082 (+) True LOC110531220
XM_036989170.1 mRNA upstream 324719 8877593 ~ 8915400 (+) False usp13
XM_036990199.1 mRNA downstream 128452 9428517 ~ 9436879 (+) False LOC118966743
XM_036990336.1 mRNA downstream 129092 9429157 ~ 9431792 (+) False LOC118966743
XM_036990127.1 mRNA downstream 129236 9429301 ~ 9436879 (+) False LOC118966743
XM_036990165.1 mRNA downstream 129236 9429301 ~ 9436879 (+) False LOC118966743
XM_036990224.1 mRNA downstream 129236 9429301 ~ 9436879 (+) False LOC118966743
TU8596 other upstream 984241 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1009884 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1202965 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1354212 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1514510 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 158883 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 683710 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 685317 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 841179 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2176599 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile